## Summary
- Add include_ignored to local-agent grep and list_files so ignored and
hidden paths can be inspected only when requested.
- Remove include_hidden from list_files, add a root recursive
ignored-listing guard, cap list output at 1000 paths, and sort
directories before files.
- Update local-agent tests and snapshots, including a less brittle
read_logs E2E assertion.

## Test plan
- PYTHON=/usr/bin/python3 npm run build
- PLAYWRIGHT_HTML_OPEN=never npm run e2e --
e2e-tests/local_agent_search_replace.spec.ts
e2e-tests/local_agent_step_limit.spec.ts
e2e-tests/local_agent_consent.spec.ts
e2e-tests/local_agent_code_search.spec.ts
e2e-tests/local_agent_advanced.spec.ts
e2e-tests/local_agent_file_upload.spec.ts
e2e-tests/local_agent_basic.spec.ts e2e-tests/local_agent_grep.spec.ts
e2e-tests/local_agent_auto.spec.ts
e2e-tests/local_agent_list_files.spec.ts
e2e-tests/local_agent_ask.spec.ts
e2e-tests/local_agent_todo_followup.spec.ts
e2e-tests/local_agent_summarize.spec.ts
e2e-tests/local_agent_read_logs.spec.ts
e2e-tests/local_agent_generate_image.spec.ts
e2e-tests/local_agent_connection_retry.spec.ts
e2e-tests/local_agent_persistent_todos.spec.ts
e2e-tests/local_agent_web_fetch.spec.ts
e2e-tests/local_agent_run_type_checks.spec.ts
- npm run fmt && npm run lint:fix && npm run ts
- npm test
<!-- devin-review-badge-begin -->

---

<a href="https://app.devin.ai/review/dyad-sh/dyad/pull/3256"
target="_blank">
  <picture>
<source media="(prefers-color-scheme: dark)"
srcset="https://static.devin.ai/assets/gh-open-in-devin-review-dark.svg?v=1">
<img
src="https://static.devin.ai/assets/gh-open-in-devin-review-light.svg?v=1"
alt="Open in Devin Review">
  </picture>
</a>
<!-- devin-review-badge-end -->

---------
Co-authored-by: Will Chen <7344640+wwwillchen@users.noreply.github.com>