add thunk.inputs and thunk.output automatically at many places.

theano/compile/debugmode.py

@@ -1680,6 +1680,8 @@ class _Linker(gof.link.LocalLinker):
                                            storage_map,
                                            compute_map,
                                            no_recycling)
+                thunk.inputs = [storage_map[v] for v in node.inputs]
+                thunk.outputs = [storage_map[v] for v in node.outputs]
 
                 # Right now there is no op that when called check if
                 # its ouputs are computed and don't recompute itself.

theano/gof/cc.py

@@ -1498,6 +1498,9 @@ class OpWiseCLinker(link.LocalLinker):
                                         storage_map,
                                         compute_map,
                                         no_recycling)]
+                    thunks[-1].inputs = [storage_map[v] for v in node.inputs]
+                    thunks[-1].outputs = [storage_map[v] for v in node.outputs]
+
                 finally:
                     node.op._op_use_c_code = old_value
 

theano/gof/link.py

@@ -526,6 +526,8 @@ class PerformLinker(LocalLinker):
                                               storage_map,
                                               compute_map,
                                               no_recycling)]
+                thunks[-1].inputs = [storage_map[v] for v in node.inputs]
+                thunks[-1].outputs = [storage_map[v] for v in node.outputs]
             finally:
                 node.op._op_use_c_code = old_value
 

theano/gof/op.py

@@ -431,6 +431,8 @@ class PureOp(object):
                 # compute output value once with test inputs to validate graph
                 thunk = node.op.make_thunk(node, storage_map, compute_map,
                         no_recycling=[])
+                thunk.inputs = [storage_map[v] for v in node.inputs]
+                thunk.outputs = [storage_map[v] for v in node.outputs]
 
                 required = thunk()
                 assert not required  # We provided all inputs

theano/gof/vm.py

@@ -843,6 +843,9 @@ class VM_Linker(link.LocalLinker):
                     compute_map,
                     no_recycling)
                         for node in order]
+        for node, thunk in zip(order, thunks):
+            thunk.inputs = [storage_map[v] for v in node.inputs]
+            thunk.outputs = [storage_map[v] for v in node.outputs]
 
         computed, last_user = link.gc_helper(order)
         if self.allow_gc: