Fix add dependencies to profile

theano/gof/vm.py

@@ -151,6 +151,9 @@ class VM(object):
         if hasattr(self, 'node_cleared_order'):
             profile.node_cleared_order = self.node_cleared_order[:]
 
+        if hasattr(self, 'dependencies'):
+            profile.dependencies = self.dependencies
+
         # clear the timer info out of the buffers
         for i in xrange(len(self.call_times)):
             self.call_times[i] = 0.0