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pytensor
Commits
9b2cb97e
提交
9b2cb97e
authored
12月 30, 2022
作者:
Ricardo Vieira
提交者:
Thomas Wiecki
1月 05, 2023
浏览文件
操作
浏览文件
下载
电子邮件补丁
差异文件
Implement Hyp2F1 and gradients
Co-authored-by:
ColtAllen
<
10178857+coltallen@users.noreply.github.com
>
上级
005a3a02
隐藏空白字符变更
内嵌
并排
正在显示
4 个修改的文件
包含
366 行增加
和
0 行删除
+366
-0
math.py
pytensor/scalar/math.py
+166
-0
inplace.py
pytensor/tensor/inplace.py
+5
-0
math.py
pytensor/tensor/math.py
+6
-0
test_math_scipy.py
tests/tensor/test_math_scipy.py
+189
-0
没有找到文件。
pytensor/scalar/math.py
浏览文件 @
9b2cb97e
...
@@ -1481,3 +1481,169 @@ class BetaIncDer(ScalarOp):
...
@@ -1481,3 +1481,169 @@ class BetaIncDer(ScalarOp):
betainc_der
=
BetaIncDer
(
upgrade_to_float_no_complex
,
name
=
"betainc_der"
)
betainc_der
=
BetaIncDer
(
upgrade_to_float_no_complex
,
name
=
"betainc_der"
)
class
Hyp2F1
(
ScalarOp
):
"""
Gaussian hypergeometric function ``2F1(a, b; c; z)``.
"""
nin
=
4
nfunc_spec
=
(
"scipy.special.hyp2f1"
,
4
,
1
)
@staticmethod
def
st_impl
(
a
,
b
,
c
,
z
):
return
scipy
.
special
.
hyp2f1
(
a
,
b
,
c
,
z
)
def
impl
(
self
,
a
,
b
,
c
,
z
):
return
Hyp2F1
.
st_impl
(
a
,
b
,
c
,
z
)
def
grad
(
self
,
inputs
,
grads
):
a
,
b
,
c
,
z
=
inputs
(
gz
,)
=
grads
return
[
gz
*
hyp2f1_der
(
a
,
b
,
c
,
z
,
wrt
=
0
),
gz
*
hyp2f1_der
(
a
,
b
,
c
,
z
,
wrt
=
1
),
gz
*
hyp2f1_der
(
a
,
b
,
c
,
z
,
wrt
=
2
),
gz
*
((
a
*
b
)
/
c
)
*
hyp2f1
(
a
+
1
,
b
+
1
,
c
+
1
,
z
),
]
def
c_code
(
self
,
*
args
,
**
kwargs
):
raise
NotImplementedError
()
hyp2f1
=
Hyp2F1
(
upgrade_to_float
,
name
=
"hyp2f1"
)
class
Hyp2F1Der
(
ScalarOp
):
"""
Derivatives of the Gaussian Hypergeometric function ``2F1(a, b; c; z)`` with respect to one of the first 3 inputs.
Adapted from https://github.com/stan-dev/math/blob/develop/stan/math/prim/fun/grad_2F1.hpp
"""
nin
=
5
def
impl
(
self
,
a
,
b
,
c
,
z
,
wrt
):
def
check_2f1_converges
(
a
,
b
,
c
,
z
)
->
bool
:
num_terms
=
0
is_polynomial
=
False
def
is_nonpositive_integer
(
x
):
return
x
<=
0
and
x
.
is_integer
()
if
is_nonpositive_integer
(
a
)
and
abs
(
a
)
>=
num_terms
:
is_polynomial
=
True
num_terms
=
int
(
np
.
floor
(
abs
(
a
)))
if
is_nonpositive_integer
(
b
)
and
abs
(
b
)
>=
num_terms
:
is_polynomial
=
True
num_terms
=
int
(
np
.
floor
(
abs
(
b
)))
is_undefined
=
is_nonpositive_integer
(
c
)
and
abs
(
c
)
<=
num_terms
return
not
is_undefined
and
(
is_polynomial
or
np
.
abs
(
z
)
<
1
or
(
np
.
abs
(
z
)
==
1
and
c
>
(
a
+
b
))
)
def
compute_grad_2f1
(
a
,
b
,
c
,
z
,
wrt
):
"""
Notes
-----
The algorithm can be derived by looking at the ratio of two successive terms in the series
β_{k+1}/β_{k} = A(k)/B(k)
β_{k+1} = A(k)/B(k) * β_{k}
d[β_{k+1}] = d[A(k)/B(k)] * β_{k} + A(k)/B(k) * d[β_{k}] via the product rule
In the 2F1, A(k)/B(k) corresponds to (((a + k) * (b + k) / ((c + k) (1 + k))) * z
The partial d[A(k)/B(k)] with respect to the 3 first inputs can be obtained from the ratio A(k)/B(k),
by dropping the respective term
d/da[A(k)/B(k)] = A(k)/B(k) / (a + k)
d/db[A(k)/B(k)] = A(k)/B(k) / (b + k)
d/dc[A(k)/B(k)] = A(k)/B(k) * (c + k)
The algorithm is implemented in the log scale, which adds the complexity of working with absolute terms and
tracking their signs.
"""
wrt_a
=
wrt_b
=
False
if
wrt
==
0
:
wrt_a
=
True
elif
wrt
==
1
:
wrt_b
=
True
elif
wrt
!=
2
:
raise
ValueError
(
f
"wrt must be 0, 1, or 2, got {wrt}"
)
min_steps
=
10
# https://github.com/stan-dev/math/issues/2857
max_steps
=
int
(
1e6
)
precision
=
1e-14
res
=
0
if
z
==
0
:
return
res
log_g_old
=
-
np
.
inf
log_t_old
=
0.0
log_t_new
=
0.0
sign_z
=
np
.
sign
(
z
)
log_z
=
np
.
log
(
np
.
abs
(
z
))
log_g_old_sign
=
1
log_t_old_sign
=
1
log_t_new_sign
=
1
sign_zk
=
sign_z
for
k
in
range
(
max_steps
):
p
=
(
a
+
k
)
*
(
b
+
k
)
/
((
c
+
k
)
*
(
k
+
1
))
if
p
==
0
:
return
res
log_t_new
+=
np
.
log
(
np
.
abs
(
p
))
+
log_z
log_t_new_sign
=
np
.
sign
(
p
)
*
log_t_new_sign
term
=
log_g_old_sign
*
log_t_old_sign
*
np
.
exp
(
log_g_old
-
log_t_old
)
if
wrt_a
:
term
+=
np
.
reciprocal
(
a
+
k
)
elif
wrt_b
:
term
+=
np
.
reciprocal
(
b
+
k
)
else
:
term
-=
np
.
reciprocal
(
c
+
k
)
log_g_old
=
log_t_new
+
np
.
log
(
np
.
abs
(
term
))
log_g_old_sign
=
np
.
sign
(
term
)
*
log_t_new_sign
g_current
=
log_g_old_sign
*
np
.
exp
(
log_g_old
)
*
sign_zk
res
+=
g_current
log_t_old
=
log_t_new
log_t_old_sign
=
log_t_new_sign
sign_zk
*=
sign_z
if
k
>=
min_steps
and
np
.
abs
(
g_current
)
<=
precision
:
return
res
warnings
.
warn
(
f
"hyp2f1_der did not converge after {k} iterations"
,
RuntimeWarning
,
)
return
np
.
nan
# TODO: We could implement the Euler transform to expand supported domain, as Stan does
if
not
check_2f1_converges
(
a
,
b
,
c
,
z
):
warnings
.
warn
(
f
"Hyp2F1 does not meet convergence conditions with given arguments a={a}, b={b}, c={c}, z={z}"
,
RuntimeWarning
,
)
return
np
.
nan
return
compute_grad_2f1
(
a
,
b
,
c
,
z
,
wrt
=
wrt
)
def
__call__
(
self
,
a
,
b
,
c
,
z
,
wrt
):
# This allows wrt to be a keyword argument
return
super
()
.
__call__
(
a
,
b
,
c
,
z
,
wrt
)
def
c_code
(
self
,
*
args
,
**
kwargs
):
raise
NotImplementedError
()
hyp2f1_der
=
Hyp2F1Der
(
upgrade_to_float
,
name
=
"hyp2f1_der"
)
pytensor/tensor/inplace.py
浏览文件 @
9b2cb97e
...
@@ -392,6 +392,11 @@ def conj_inplace(a):
...
@@ -392,6 +392,11 @@ def conj_inplace(a):
"""elementwise conjugate (inplace on `a`)"""
"""elementwise conjugate (inplace on `a`)"""
@scalar_elemwise
def
hyp2f1_inplace
(
a
,
b
,
c
,
z
):
"""gaussian hypergeometric function"""
pprint
.
assign
(
add_inplace
,
printing
.
OperatorPrinter
(
"+="
,
-
2
,
"either"
))
pprint
.
assign
(
add_inplace
,
printing
.
OperatorPrinter
(
"+="
,
-
2
,
"either"
))
pprint
.
assign
(
mul_inplace
,
printing
.
OperatorPrinter
(
"*="
,
-
1
,
"either"
))
pprint
.
assign
(
mul_inplace
,
printing
.
OperatorPrinter
(
"*="
,
-
1
,
"either"
))
pprint
.
assign
(
sub_inplace
,
printing
.
OperatorPrinter
(
"-="
,
-
2
,
"left"
))
pprint
.
assign
(
sub_inplace
,
printing
.
OperatorPrinter
(
"-="
,
-
2
,
"left"
))
...
...
pytensor/tensor/math.py
浏览文件 @
9b2cb97e
...
@@ -1384,6 +1384,11 @@ def gammal(k, x):
...
@@ -1384,6 +1384,11 @@ def gammal(k, x):
"""Lower incomplete gamma function."""
"""Lower incomplete gamma function."""
@scalar_elemwise
def
hyp2f1
(
a
,
b
,
c
,
z
):
"""Gaussian hypergeometric function."""
@scalar_elemwise
@scalar_elemwise
def
j0
(
x
):
def
j0
(
x
):
"""Bessel function of the first kind of order 0."""
"""Bessel function of the first kind of order 0."""
...
@@ -3132,4 +3137,5 @@ __all__ = [
...
@@ -3132,4 +3137,5 @@ __all__ = [
"power"
,
"power"
,
"logaddexp"
,
"logaddexp"
,
"logsumexp"
,
"logsumexp"
,
"hyp2f1"
,
]
]
tests/tensor/test_math_scipy.py
浏览文件 @
9b2cb97e
from
contextlib
import
ExitStack
as
does_not_warn
import
numpy
as
np
import
numpy
as
np
import
pytest
import
pytest
...
@@ -71,6 +73,7 @@ expected_i1 = scipy.special.i1
...
@@ -71,6 +73,7 @@ expected_i1 = scipy.special.i1
expected_iv
=
scipy
.
special
.
iv
expected_iv
=
scipy
.
special
.
iv
expected_erfcx
=
scipy
.
special
.
erfcx
expected_erfcx
=
scipy
.
special
.
erfcx
expected_sigmoid
=
scipy
.
special
.
expit
expected_sigmoid
=
scipy
.
special
.
expit
expected_hyp2f1
=
scipy
.
special
.
hyp2f1
TestErfBroadcast
=
makeBroadcastTester
(
TestErfBroadcast
=
makeBroadcastTester
(
op
=
at
.
erf
,
op
=
at
.
erf
,
...
@@ -820,3 +823,189 @@ class TestBetaIncGrad:
...
@@ -820,3 +823,189 @@ class TestBetaIncGrad:
np
.
testing
.
assert_allclose
(
np
.
testing
.
assert_allclose
(
f_grad
(
test_a
,
test_b
,
test_z
),
[
expected_dda
,
expected_ddb
]
f_grad
(
test_a
,
test_b
,
test_z
),
[
expected_dda
,
expected_ddb
]
)
)
_good_broadcast_quaternary_hyp2f1
=
dict
(
normal
=
(
random_ranged
(
0
,
20
,
(
2
,
3
)),
random_ranged
(
0
,
20
,
(
2
,
3
)),
random_ranged
(
0
,
20
,
(
2
,
3
)),
random_ranged
(
-
0.9
,
0.9
,
(
2
,
3
)),
),
)
TestHyp2F1Broadcast
=
makeBroadcastTester
(
op
=
at
.
hyp2f1
,
expected
=
expected_hyp2f1
,
good
=
_good_broadcast_quaternary_hyp2f1
,
grad
=
_good_broadcast_quaternary_hyp2f1
,
)
TestHyp2F1InplaceBroadcast
=
makeBroadcastTester
(
op
=
inplace
.
hyp2f1_inplace
,
expected
=
expected_hyp2f1
,
good
=
_good_broadcast_quaternary_hyp2f1
,
inplace
=
True
,
)
def
test_hyp2f1_grad_stan_cases
():
"""This test reuses the same test cases as in:
https://github.com/stan-dev/math/blob/master/test/unit/math/prim/fun/grad_2F1_test.cpp
https://github.com/andrjohns/math/blob/develop/test/unit/math/prim/fun/hypergeometric_2F1_test.cpp
Note: The expected_ddz was computed from the perform method, as it is not part of all Stan tests
"""
a1
,
a2
,
b1
,
z
=
at
.
scalars
(
"a1"
,
"a2"
,
"b1"
,
"z"
)
betainc_out
=
at
.
hyp2f1
(
a1
,
a2
,
b1
,
z
)
betainc_grad
=
at
.
grad
(
betainc_out
,
[
a1
,
a2
,
b1
,
z
])
f_grad
=
function
([
a1
,
a2
,
b1
,
z
],
betainc_grad
)
rtol
=
1e-9
if
config
.
floatX
==
"float64"
else
1e-3
for
(
test_a1
,
test_a2
,
test_b1
,
test_z
,
expected_dda1
,
expected_dda2
,
expected_ddb1
,
expected_ddz
,
)
in
(
(
3.70975
,
1.0
,
2.70975
,
-
0.2
,
-
0.0488658806159776
,
-
0.193844936204681
,
0.0677809985598383
,
0.8652952472723672
,
),
(
3.70975
,
1.0
,
2.70975
,
0
,
0
,
0
,
0
,
1.369037734108313
),
(
1.0
,
1.0
,
1.0
,
0.6
,
2.290726829685388
,
2.290726829685388
,
-
2.290726829685388
,
6.25
,
),
(
1.0
,
31.0
,
41.0
,
1.0
,
6.825270649241036
,
0.4938271604938271
,
-
0.382716049382716
,
17.22222222222223
,
),
(
1.0
,
-
2.1
,
41.0
,
1.0
,
-
0.04921317604093563
,
0.02256814168279349
,
0.00118482743834665
,
-
0.04854621426218426
,
),
(
1.0
,
-
0.5
,
10.6
,
0.3
,
-
0.01443822031245647
,
0.02829710651967078
,
0.00136986255602642
,
-
0.04846036062115473
,
),
(
1.0
,
-
0.5
,
10.0
,
0.3
,
-
0.0153218866216130
,
0.02999436412836072
,
0.0015413242328729
,
-
0.05144686244336445
,
),
(
-
0.5
,
-
4.5
,
11.0
,
0.3
,
-
0.1227022810085707
,
-
0.01298849638043795
,
-
0.0053540982315572
,
0.1959735211840362
,
),
(
-
0.5
,
-
4.5
,
-
3.2
,
0.9
,
0.85880025358111
,
0.4677704416159314
,
-
4.19010422485256
,
-
2.959196647856408
,
),
(
3.70975
,
1.0
,
2.70975
,
-
0.2
,
-
0.0488658806159776
,
-
0.193844936204681
,
0.0677809985598383
,
0.865295247272367
,
),
(
2.0
,
1.0
,
2.0
,
0.4
,
0.4617734323582945
,
0.851376039609984
,
-
0.4617734323582945
,
2.777777777777778
,
),
(
3.70975
,
1.0
,
2.70975
,
0.999696
,
29369830.002773938200417693317785
,
36347869.41885337
,
-
30843032.10697079073015067426929807
,
26278034019.28811
,
),
# Cases where series does not converge
(
1.0
,
12.0
,
10.0
,
1.0
,
np
.
nan
,
np
.
nan
,
np
.
nan
,
np
.
inf
),
(
1.0
,
12.0
,
20.0
,
1.2
,
np
.
nan
,
np
.
nan
,
np
.
nan
,
np
.
inf
),
# Case where series converges under Euler transform (not implemented!)
# (1.0, 1.0, 2.0, -5.0, -0.321040199556840, -0.321040199556840, 0.129536268190289, 0.0383370454357889),
(
1.0
,
1.0
,
2.0
,
-
5.0
,
np
.
nan
,
np
.
nan
,
np
.
nan
,
0.0383370454357889
),
):
expectation
=
(
pytest
.
warns
(
RuntimeWarning
,
match
=
"Hyp2F1 does not meet convergence conditions"
)
if
np
.
any
(
np
.
isnan
([
expected_dda1
,
expected_dda2
,
expected_ddb1
,
expected_ddz
])
)
else
does_not_warn
()
)
with
expectation
:
result
=
np
.
array
(
f_grad
(
test_a1
,
test_a2
,
test_b1
,
test_z
))
np
.
testing
.
assert_allclose
(
result
,
np
.
array
([
expected_dda1
,
expected_dda2
,
expected_ddb1
,
expected_ddz
]),
rtol
=
rtol
,
)
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