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pytensor
Commits
5213962b
提交
5213962b
authored
5月 15, 2021
作者:
kc611
提交者:
Brandon T. Willard
6月 25, 2021
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差异文件
Added Numba support for RandomVariable Ops
上级
46c772da
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隐藏空白字符变更
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正在显示
3 个修改的文件
包含
189 行增加
和
4 行删除
+189
-4
dispatch.py
aesara/link/numba/dispatch.py
+176
-2
linker.py
aesara/link/numba/linker.py
+13
-2
test_numba.py
tests/link/test_numba.py
+0
-0
没有找到文件。
aesara/link/numba/dispatch.py
浏览文件 @
5213962b
...
...
@@ -3,7 +3,7 @@ import operator
import
warnings
from
functools
import
reduce
,
singledispatch
from
numbers
import
Number
from
textwrap
import
indent
from
textwrap
import
dedent
,
indent
from
typing
import
List
,
Union
import
numba
...
...
@@ -11,13 +11,15 @@ import numpy as np
import
scipy
import
scipy.special
from
llvmlite.llvmpy.core
import
Type
as
llvm_Type
from
numba
import
types
from
numba
import
_helperlib
,
types
from
numba.core.errors
import
TypingError
from
numba.cpython.unsafe.tuple
import
tuple_setitem
from
numba.extending
import
box
from
numba.np.unsafe.ndarray
import
to_fixed_tuple
from
numpy.core.multiarray
import
normalize_axis_index
from
numpy.random
import
RandomState
import
aesara.tensor.random.basic
as
aer
from
aesara.compile.ops
import
DeepCopyOp
,
ViewOp
from
aesara.graph.basic
import
Apply
,
Variable
from
aesara.graph.fg
import
FunctionGraph
...
...
@@ -53,6 +55,7 @@ from aesara.tensor.basic import (
Rebroadcast
,
ScalarFromTensor
,
TensorFromScalar
,
get_vector_length
,
)
from
aesara.tensor.blas
import
BatchedDot
from
aesara.tensor.elemwise
import
CAReduce
,
DimShuffle
,
Elemwise
...
...
@@ -80,6 +83,8 @@ from aesara.tensor.nlinalg import (
QRFull
,
)
from
aesara.tensor.nnet.basic
import
LogSoftmax
,
Softmax
from
aesara.tensor.random.type
import
RandomStateType
from
aesara.tensor.random.var
import
RandomStateSharedVariable
from
aesara.tensor.shape
import
Reshape
,
Shape
,
Shape_i
,
SpecifyShape
from
aesara.tensor.slinalg
import
Cholesky
,
Solve
from
aesara.tensor.subtensor
import
(
...
...
@@ -301,6 +306,14 @@ def numba_typify(data, dtype=None, **kwargs):
return
data
@numba_typify.register
(
RandomState
)
def
numba_typify_RandomState
(
state
,
**
kwargs
):
ints
,
index
=
state
.
get_state
()[
1
:
3
]
ptr
=
_helperlib
.
rnd_get_np_state_ptr
()
_helperlib
.
rnd_set_state
(
ptr
,
(
index
,
[
int
(
x
)
for
x
in
ints
]))
return
ints
@singledispatch
def
numba_funcify
(
op
,
node
=
None
,
storage_map
=
None
,
**
kwargs
):
"""Create a Numba compatible function from an Aesara `Op`."""
...
...
@@ -1934,3 +1947,164 @@ def numba_funcify_BatchedDot(op, node, **kwargs):
# NOTE: The remaining `aesara.tensor.blas` `Op`s appear unnecessary, because
# they're only used to optimize basic `Dot` nodes, and those GEMV and GEMM
# optimizations are apparently already performed by Numba
def
make_numba_random_fn
(
node
,
np_random_func
):
"""Create Numba implementations for existing Numba-supported ``np.random`` functions.
The functions generated here add parameter broadcasting and the ``size``
argument to the Numba-supported scalar ``np.random`` functions.
"""
tuple_size
=
get_vector_length
(
node
.
inputs
[
1
])
size_dims
=
tuple_size
-
max
(
i
.
ndim
for
i
in
node
.
inputs
[
3
:])
# Make a broadcast-capable version of the Numba supported scalar sampling
# function
bcast_fn_name
=
f
"aesara_random_{get_name_for_object(np_random_func)}"
sized_fn_name
=
"sized_random_variable"
unique_names
=
unique_name_generator
(
[
bcast_fn_name
,
sized_fn_name
,
"np"
,
"np_random_func"
,
"numba_vectorize"
,
"to_fixed_tuple"
,
"tuple_size"
,
"size_dims"
,
"rng"
,
"size"
,
"dtype"
,
],
suffix_sep
=
"_"
,
)
bcast_fn_input_names
=
", "
.
join
(
[
unique_names
(
i
,
force_unique
=
True
)
for
i
in
node
.
inputs
[
3
:]]
)
bcast_fn_global_env
=
{
"np_random_func"
:
np_random_func
,
"numba_vectorize"
:
numba
.
vectorize
,
}
bcast_fn_src
=
f
"""
@numba_vectorize
def {bcast_fn_name}({bcast_fn_input_names}):
return np_random_func({bcast_fn_input_names})
"""
bcast_fn
=
compile_function_src
(
bcast_fn_src
,
bcast_fn_name
,
bcast_fn_global_env
)
random_fn_input_names
=
", "
.
join
(
[
"rng"
,
"size"
,
"dtype"
]
+
[
unique_names
(
i
)
for
i
in
node
.
inputs
[
3
:]]
)
# Now, create a Numba JITable function that implements the `size` parameter
random_fn_global_env
=
{
bcast_fn_name
:
bcast_fn
,
}
if
tuple_size
>
0
:
random_fn_body
=
dedent
(
f
"""
size = to_fixed_tuple(size, tuple_size)
data = np.empty(size)
for i in np.ndindex(size[:size_dims]):
data[i] = {bcast_fn_name}({bcast_fn_input_names})
"""
)
random_fn_global_env
.
update
(
{
"np"
:
np
,
"to_fixed_tuple"
:
to_fixed_tuple
,
"tuple_size"
:
tuple_size
,
"size_dims"
:
size_dims
,
}
)
else
:
random_fn_body
=
f
"""data = {bcast_fn_name}({bcast_fn_input_names})"""
sized_fn_src
=
dedent
(
f
"""
def {sized_fn_name}({random_fn_input_names}):
{indent(random_fn_body, " " * 4)}
return (rng, data)
"""
)
random_fn
=
compile_function_src
(
sized_fn_src
,
sized_fn_name
,
random_fn_global_env
)
random_fn
=
numba
.
njit
(
random_fn
)
return
random_fn
@numba_funcify.register
(
aer
.
UniformRV
)
@numba_funcify.register
(
aer
.
TriangularRV
)
@numba_funcify.register
(
aer
.
BetaRV
)
@numba_funcify.register
(
aer
.
NormalRV
)
@numba_funcify.register
(
aer
.
LogNormalRV
)
@numba_funcify.register
(
aer
.
GammaRV
)
@numba_funcify.register
(
aer
.
ChiSquareRV
)
@numba_funcify.register
(
aer
.
ParetoRV
)
@numba_funcify.register
(
aer
.
GumbelRV
)
@numba_funcify.register
(
aer
.
ExponentialRV
)
@numba_funcify.register
(
aer
.
WeibullRV
)
@numba_funcify.register
(
aer
.
LogisticRV
)
@numba_funcify.register
(
aer
.
VonMisesRV
)
@numba_funcify.register
(
aer
.
PoissonRV
)
@numba_funcify.register
(
aer
.
GeometricRV
)
@numba_funcify.register
(
aer
.
HyperGeometricRV
)
@numba_funcify.register
(
aer
.
CauchyRV
)
@numba_funcify.register
(
aer
.
WaldRV
)
@numba_funcify.register
(
aer
.
LaplaceRV
)
@numba_funcify.register
(
aer
.
BinomialRV
)
@numba_funcify.register
(
aer
.
NegBinomialRV
)
@numba_funcify.register
(
aer
.
MultinomialRV
)
@numba_funcify.register
(
aer
.
RandIntRV
)
# only the first two arguments are supported
@numba_funcify.register
(
aer
.
ChoiceRV
)
# the `p` argument is not supported
@numba_funcify.register
(
aer
.
PermutationRV
)
def
numba_funcify_RandomVariable
(
op
,
node
,
**
kwargs
):
name
=
op
.
name
np_random_func
=
getattr
(
np
.
random
,
name
)
if
not
isinstance
(
node
.
inputs
[
0
],
(
RandomStateType
,
RandomStateSharedVariable
)):
raise
TypeError
(
"Numba does not support NumPy `Generator`s"
)
return
make_numba_random_fn
(
node
,
np_random_func
)
@numba_funcify.register
(
aer
.
HalfNormalRV
)
def
numba_funcify_HalfNormalRV
(
op
,
node
,
**
kwargs
):
np_random_fn_name
=
f
"aesara_random_{get_name_for_object(op.name)}"
unique_names
=
unique_name_generator
(
[
np_random_fn_name
,
"numba_vectorize"
,
"np_standard_norm"
,
"rng"
,
"size"
,
"dtype"
,
],
suffix_sep
=
"_"
,
)
np_names
=
[
unique_names
(
i
,
force_unique
=
True
)
for
i
in
node
.
inputs
[
3
:]]
np_input_names
=
", "
.
join
(
np_names
)
np_global_env
=
{
"np_standard_norm"
:
np
.
random
.
standard_normal
,
"numba_vectorize"
:
numba
.
vectorize
,
}
np_random_fn_src
=
f
"""
@numba_vectorize
def {np_random_fn_name}({np_input_names}):
return {np_names[0]} + {np_names[1]} * abs(np_standard_norm())
"""
np_random_fn
=
compile_function_src
(
np_random_fn_src
,
np_random_fn_name
,
np_global_env
)
return
make_numba_random_fn
(
node
,
np_random_fn
)
aesara/link/numba/linker.py
浏览文件 @
5213962b
from
numpy.random
import
RandomState
from
aesara.link.basic
import
JITLinker
...
...
@@ -16,11 +18,20 @@ class NumbaLinker(JITLinker):
return
jitted_fn
def
create_thunk_inputs
(
self
,
storage_map
):
from
aesara.link.numba.dispatch
import
numba_typify
thunk_inputs
=
[]
for
n
in
self
.
fgraph
.
inputs
:
sinput
=
storage_map
[
n
]
# TODO:When RandomVariable conversion is implemented
# do RandomState typification over here.
if
isinstance
(
sinput
[
0
],
RandomState
):
new_value
=
numba_typify
(
sinput
[
0
],
dtype
=
getattr
(
sinput
[
0
],
"dtype"
,
None
)
)
# We need to remove the reference-based connection to the
# original `RandomState`/shared variable's storage, because
# subsequent attempts to use the same shared variable within
# other non-Numba-fied graphs will have problems.
sinput
=
[
new_value
]
thunk_inputs
.
append
(
sinput
)
return
thunk_inputs
tests/link/test_numba.py
浏览文件 @
5213962b
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