Make sure the buildbots also have the proper MKL setting.

.jenkins/jenkins_buildbot_python2.sh

@@ -2,6 +2,7 @@
 
 BUILDBOT_DIR=$WORKSPACE/nightly_build
 THEANO_PARAM="theano --with-timer --timer-top-n 10"
+export MKL_THREADING_LAYER=GNU
 export THEANO_FLAGS=init_gpu_device=cuda
 
 # CUDA

.jenkins/jenkins_buildbot_python2_32bit.sh

@@ -2,6 +2,8 @@
 
 BUILDBOT_DIR=$WORKSPACE/nightly_build
 THEANO_PARAM="theano --with-timer --timer-top-n 10"
+
+export MKL_THREADING_LAYER=GNU
 # Set test reports using nosetests xunit
 XUNIT="--with-xunit --xunit-file="
 SUITE="--xunit-testsuite-name="
@@ -15,4 +17,4 @@ echo
 FILE=${BUILDBOT_DIR}/theano_python32bit_tests.xml
 set -x
 NAME=python2_32bit
-THEANO_FLAGS=device=cpu,force_device=true,lib.amdlibm=False,compiledir=$HOME/.theano/buildbot_theano_python2_32bit python bin/theano-nose ${THEANO_PARAM} ${XUNIT}${FILE}  ${SUITE}${NAME}
+THEANO_FLAGS=device=cpu,force_device=true,lib.amdlibm=False,compiledir=$HOME/.theano/buildbot_theano_python2_32bit python bin/theano-nose ${THEANO_PARAM} ${XUNIT}${FILE}  ${SUITE}${NAME}
\ No newline at end of file

.jenkins/jenkins_buildbot_python2_debug.sh

@@ -2,6 +2,7 @@
 
 BUILDBOT_DIR=$WORKSPACE/nightly_build
 THEANO_PARAM="theano --with-timer --timer-top-n 10 -v"
+export MKL_THREADING_LAYER=GNU
 export THEANO_FLAGS=init_gpu_device=cuda
 
 # CUDA

.jenkins/jenkins_buildbot_python3.sh

@@ -3,6 +3,8 @@
 BUILDBOT_DIR=$WORKSPACE/nightly_build
 THEANO_PARAM="theano --with-timer --timer-top-n 10"
 COMPILEDIR=$HOME/.theano/buildbot_theano_python3
+export MKL_THREADING_LAYER=GNU
+
 # Set test reports using nosetests xunit
 XUNIT="--with-xunit --xunit-file="
 SUITE="--xunit-testsuite-name="
@@ -69,4 +71,4 @@ THEANO_FLAGS=$THEANO_FLAGS,compiledir=$COMPILEDIR,mode=FAST_COMPILE,warn.ignore_
 # Fast run and float32
 FILE=${BUILDBOT_DIR}/theano_python3_fastrun_f32_tests.xml
 NAME=python3_fastrun_f32
-THEANO_FLAGS=$THEANO_FLAGS,compiledir=$COMPILEDIR,mode=FAST_RUN,warn.ignore_bug_before=all,on_opt_error=raise,on_shape_error=raise,magma.enabled=true,floatX=float32 python3 bin/theano-nose ${THEANO_PARAM} ${XUNIT}${FILE} ${SUITE}${NAME}
+THEANO_FLAGS=$THEANO_FLAGS,compiledir=$COMPILEDIR,mode=FAST_RUN,warn.ignore_bug_before=all,on_opt_error=raise,on_shape_error=raise,magma.enabled=true,floatX=float32 python3 bin/theano-nose ${THEANO_PARAM} ${XUNIT}${FILE} ${SUITE}${NAME}
\ No newline at end of file

.jenkins/jenkins_buildbot_release_extra.sh

@@ -2,6 +2,7 @@
 
 BUILDBOT_DIR=$WORKSPACE/nightly_build
 THEANO_PARAM="theano --with-timer --timer-top-n 10"
+export MKL_THREADING_LAYER=GNU
 export THEANO_FLAGS=init_gpu_device=cuda
 
 # CUDA