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提交 bb999046 authored 作者: Brandon T. Willard's avatar Brandon T. Willard 提交者： Brandon T. Willard
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Use C version of time in scan_perform.pyx

上级 deca03cf
隐藏空白字符变更
内嵌 并排
正在显示 包含 406 行增加 和 437 行删除
aesara/scan/c_code/scan_perform.c
浏览文件 @ bb999046
...@@ -682,6 +682,8 @@ static CYTHON_INLINE float __PYX_NAN() { ...@@ -682,6 +682,8 @@ static CYTHON_INLINE float __PYX_NAN() {
#define __PYX_HAVE__aesara__scan__scan_perform #define __PYX_HAVE__aesara__scan__scan_perform
#define __PYX_HAVE_API__aesara__scan__scan_perform #define __PYX_HAVE_API__aesara__scan__scan_perform
/* Early includes */ /* Early includes */
#include <stddef.h>
#include <time.h>
#include <string.h> #include <string.h>
#include <stdio.h> #include <stdio.h>
#include "numpy/arrayobject.h" #include "numpy/arrayobject.h"
...@@ -2205,6 +2207,9 @@ static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *); ...@@ -2205,6 +2207,9 @@ static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *);
/* CIntToPy.proto */ /* CIntToPy.proto */
static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value); static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value);
/* CIntToPy.proto */
static CYTHON_INLINE PyObject* __Pyx_PyInt_From_time_t(time_t value);
/* CIntFromPy.proto */ /* CIntFromPy.proto */
static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *); static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *);
...@@ -2228,6 +2233,10 @@ static PyObject *__pyx_memoryview_assign_item_from_object(struct __pyx_memoryvie ...@@ -2228,6 +2233,10 @@ static PyObject *__pyx_memoryview_assign_item_from_object(struct __pyx_memoryvie
static PyObject *__pyx_memoryviewslice_convert_item_to_object(struct __pyx_memoryviewslice_obj *__pyx_v_self, char *__pyx_v_itemp); /* proto*/ static PyObject *__pyx_memoryviewslice_convert_item_to_object(struct __pyx_memoryviewslice_obj *__pyx_v_self, char *__pyx_v_itemp); /* proto*/
static PyObject *__pyx_memoryviewslice_assign_item_from_object(struct __pyx_memoryviewslice_obj *__pyx_v_self, char *__pyx_v_itemp, PyObject *__pyx_v_value); /* proto*/ static PyObject *__pyx_memoryviewslice_assign_item_from_object(struct __pyx_memoryviewslice_obj *__pyx_v_self, char *__pyx_v_itemp, PyObject *__pyx_v_value); /* proto*/
/* Module declarations from 'libc.stddef' */
/* Module declarations from 'libc.time' */
/* Module declarations from 'cython.view' */ /* Module declarations from 'cython.view' */
/* Module declarations from 'cython' */ /* Module declarations from 'cython' */
...@@ -2373,7 +2382,6 @@ static const char __pyx_k_step[] = "step"; ...@@ -2373,7 +2382,6 @@ static const char __pyx_k_step[] = "step";
static const char __pyx_k_stop[] = "stop"; static const char __pyx_k_stop[] = "stop";
static const char __pyx_k_t_fn[] = "t_fn"; static const char __pyx_k_t_fn[] = "t_fn";
static const char __pyx_k_test[] = "__test__"; static const char __pyx_k_test[] = "__test__";
static const char __pyx_k_time[] = "time";
static const char __pyx_k_ASCII[] = "ASCII"; static const char __pyx_k_ASCII[] = "ASCII";
static const char __pyx_k_begin[] = "begin"; static const char __pyx_k_begin[] = "begin";
static const char __pyx_k_class[] = "__class__"; static const char __pyx_k_class[] = "__class__";
...@@ -2711,7 +2719,6 @@ static PyObject *__pyx_n_s_tap_array_j; ...@@ -2711,7 +2719,6 @@ static PyObject *__pyx_n_s_tap_array_j;
static PyObject *__pyx_n_s_tap_array_len; static PyObject *__pyx_n_s_tap_array_len;
static PyObject *__pyx_n_s_tdx; static PyObject *__pyx_n_s_tdx;
static PyObject *__pyx_n_s_test; static PyObject *__pyx_n_s_test;
static PyObject *__pyx_n_s_time;
static PyObject *__pyx_n_s_tmp; static PyObject *__pyx_n_s_tmp;
static PyObject *__pyx_kp_s_unable_to_allocate_array_data; static PyObject *__pyx_kp_s_unable_to_allocate_array_data;
static PyObject *__pyx_kp_s_unable_to_allocate_shape_and_str; static PyObject *__pyx_kp_s_unable_to_allocate_shape_and_str;
...@@ -2769,7 +2776,7 @@ static PyObject *__pyx_tp_new_Enum(PyTypeObject *t, PyObject *a, PyObject *k); / ...@@ -2769,7 +2776,7 @@ static PyObject *__pyx_tp_new_Enum(PyTypeObject *t, PyObject *a, PyObject *k); /
static PyObject *__pyx_tp_new_memoryview(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new_memoryview(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/
static PyObject *__pyx_tp_new__memoryviewslice(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_tp_new__memoryviewslice(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/
static PyObject *__pyx_float_0_0; static PyObject *__pyx_float_0_0;
static PyObject *__pyx_float_0_319; static PyObject *__pyx_float_0_320;
static PyObject *__pyx_int_0; static PyObject *__pyx_int_0;
static PyObject *__pyx_int_1; static PyObject *__pyx_int_1;
static PyObject *__pyx_int_184977713; static PyObject *__pyx_int_184977713;
...@@ -2813,7 +2820,7 @@ static PyObject *__pyx_codeobj__33; ...@@ -2813,7 +2820,7 @@ static PyObject *__pyx_codeobj__33;
* *
* *
* def get_version(): # <<<<<<<<<<<<<< * def get_version(): # <<<<<<<<<<<<<<
* return 0.319 * return 0.320
* *
*/ */
...@@ -2839,20 +2846,20 @@ static PyObject *__pyx_pf_6aesara_4scan_12scan_perform_get_version(CYTHON_UNUSED ...@@ -2839,20 +2846,20 @@ static PyObject *__pyx_pf_6aesara_4scan_12scan_perform_get_version(CYTHON_UNUSED
/* "aesara/scan/scan_perform.pyx":65 /* "aesara/scan/scan_perform.pyx":65
* *
* def get_version(): * def get_version():
* return 0.319 # <<<<<<<<<<<<<< * return 0.320 # <<<<<<<<<<<<<<
* *
* # TODO: We need to get rid of the negative indexing performed with `pos` and `l`. * # TODO: We need to get rid of the negative indexing performed with `pos` and `l`.
*/ */
__Pyx_XDECREF(__pyx_r); __Pyx_XDECREF(__pyx_r);
__Pyx_INCREF(__pyx_float_0_319); __Pyx_INCREF(__pyx_float_0_320);
__pyx_r = __pyx_float_0_319; __pyx_r = __pyx_float_0_320;
goto __pyx_L0; goto __pyx_L0;
/* "aesara/scan/scan_perform.pyx":64 /* "aesara/scan/scan_perform.pyx":64
* *
* *
* def get_version(): # <<<<<<<<<<<<<< * def get_version(): # <<<<<<<<<<<<<<
* return 0.319 * return 0.320
* *
*/ */
...@@ -3239,9 +3246,9 @@ static PyObject *__pyx_pw_6aesara_4scan_12scan_perform_3perform(PyObject *__pyx_ ...@@ -3239,9 +3246,9 @@ static PyObject *__pyx_pw_6aesara_4scan_12scan_perform_3perform(PyObject *__pyx_
} }
static PyObject *__pyx_pf_6aesara_4scan_12scan_perform_2perform(CYTHON_UNUSED PyObject *__pyx_self, unsigned int __pyx_v_n_shared_outs, unsigned int __pyx_v_n_mit_mot_outs, unsigned int __pyx_v_n_seqs, unsigned int __pyx_v_n_mit_mot, unsigned int __pyx_v_n_mit_sot, unsigned int __pyx_v_n_sit_sot, unsigned int __pyx_v_n_nit_sot, int __pyx_v_as_while, __Pyx_memviewslice __pyx_v_mintaps, __Pyx_memviewslice __pyx_v_pos, __Pyx_memviewslice __pyx_v_store_steps, PyObject *__pyx_v_tap_array, PyObject *__pyx_v_tap_array_len, __Pyx_memviewslice __pyx_v_vector_seqs, __Pyx_memviewslice __pyx_v_vector_outs, PyObject *__pyx_v_mit_mot_out_slices, __Pyx_memviewslice __pyx_v_mitmots_preallocated, __Pyx_memviewslice __pyx_v_outs_is_tensor, PyObject *__pyx_v_inner_input_storage, PyObject *__pyx_v_inner_output_storage, __Pyx_memviewslice __pyx_v_destroy_map, PyObject *__pyx_v_outer_inputs, PyObject *__pyx_v_outer_outputs, PyObject *__pyx_v_outer_output_dtypes, PyObject *__pyx_v_outer_output_ndims, PyObject *__pyx_v_fn) { static PyObject *__pyx_pf_6aesara_4scan_12scan_perform_2perform(CYTHON_UNUSED PyObject *__pyx_self, unsigned int __pyx_v_n_shared_outs, unsigned int __pyx_v_n_mit_mot_outs, unsigned int __pyx_v_n_seqs, unsigned int __pyx_v_n_mit_mot, unsigned int __pyx_v_n_mit_sot, unsigned int __pyx_v_n_sit_sot, unsigned int __pyx_v_n_nit_sot, int __pyx_v_as_while, __Pyx_memviewslice __pyx_v_mintaps, __Pyx_memviewslice __pyx_v_pos, __Pyx_memviewslice __pyx_v_store_steps, PyObject *__pyx_v_tap_array, PyObject *__pyx_v_tap_array_len, __Pyx_memviewslice __pyx_v_vector_seqs, __Pyx_memviewslice __pyx_v_vector_outs, PyObject *__pyx_v_mit_mot_out_slices, __Pyx_memviewslice __pyx_v_mitmots_preallocated, __Pyx_memviewslice __pyx_v_outs_is_tensor, PyObject *__pyx_v_inner_input_storage, PyObject *__pyx_v_inner_output_storage, __Pyx_memviewslice __pyx_v_destroy_map, PyObject *__pyx_v_outer_inputs, PyObject *__pyx_v_outer_outputs, PyObject *__pyx_v_outer_output_dtypes, PyObject *__pyx_v_outer_output_ndims, PyObject *__pyx_v_fn) {
float __pyx_v_t_fn; time_t __pyx_v_t_fn;
float __pyx_v_t0_fn; time_t __pyx_v_t0_fn;
float __pyx_v_dt_fn; time_t __pyx_v_dt_fn;
unsigned int __pyx_v_n_steps; unsigned int __pyx_v_n_steps;
unsigned int __pyx_v_n_outs; unsigned int __pyx_v_n_outs;
unsigned int __pyx_v_seqs_arg_offset; unsigned int __pyx_v_seqs_arg_offset;
...@@ -3318,21 +3325,20 @@ static PyObject *__pyx_pf_6aesara_4scan_12scan_perform_2perform(CYTHON_UNUSED Py ...@@ -3318,21 +3325,20 @@ static PyObject *__pyx_pf_6aesara_4scan_12scan_perform_2perform(CYTHON_UNUSED Py
int __pyx_t_17; int __pyx_t_17;
Py_ssize_t __pyx_t_18; Py_ssize_t __pyx_t_18;
PyObject *(*__pyx_t_19)(PyObject *); PyObject *(*__pyx_t_19)(PyObject *);
float __pyx_t_20; PyObject *__pyx_t_20 = NULL;
PyObject *__pyx_t_21 = NULL; PyObject *__pyx_t_21 = NULL;
PyObject *__pyx_t_22 = NULL; PyObject *__pyx_t_22 = NULL;
PyObject *__pyx_t_23 = NULL; PyObject *__pyx_t_23 = NULL;
PyObject *__pyx_t_24 = NULL; PyObject *__pyx_t_24 = NULL;
PyObject *__pyx_t_25 = NULL; PyObject *__pyx_t_25 = NULL;
PyObject *__pyx_t_26 = NULL; PyObject *__pyx_t_26 = NULL;
PyObject *__pyx_t_27 = NULL; char const *__pyx_t_27;
char const *__pyx_t_28; PyObject *__pyx_t_28 = NULL;
PyObject *__pyx_t_29 = NULL; PyObject *__pyx_t_29 = NULL;
PyObject *__pyx_t_30 = NULL; PyObject *__pyx_t_30 = NULL;
PyObject *__pyx_t_31 = NULL; PyObject *__pyx_t_31 = NULL;
PyObject *__pyx_t_32 = NULL; PyObject *__pyx_t_32 = NULL;
PyObject *__pyx_t_33 = NULL; PyObject *__pyx_t_33 = NULL;
PyObject *__pyx_t_34 = NULL;
int __pyx_lineno = 0; int __pyx_lineno = 0;
const char *__pyx_filename = NULL; const char *__pyx_filename = NULL;
int __pyx_clineno = 0; int __pyx_clineno = 0;
...@@ -3341,15 +3347,15 @@ static PyObject *__pyx_pf_6aesara_4scan_12scan_perform_2perform(CYTHON_UNUSED Py ...@@ -3341,15 +3347,15 @@ static PyObject *__pyx_pf_6aesara_4scan_12scan_perform_2perform(CYTHON_UNUSED Py
/* "aesara/scan/scan_perform.pyx":167 /* "aesara/scan/scan_perform.pyx":167
* # 1. Unzip the number of steps and sequences. If number of steps is * # 1. Unzip the number of steps and sequences. If number of steps is
* # negative flip sequences around, and make n_steps positive * # negative flip sequences around, and make n_steps positive
* cdef float t_fn = 0 # <<<<<<<<<<<<<< * cdef time_t t_fn = 0 # <<<<<<<<<<<<<<
* cdef float t0_fn * cdef time_t t0_fn
* cdef float dt_fn * cdef time_t dt_fn
*/ */
__pyx_v_t_fn = 0.0; __pyx_v_t_fn = 0;
/* "aesara/scan/scan_perform.pyx":170 /* "aesara/scan/scan_perform.pyx":170
* cdef float t0_fn * cdef time_t t0_fn
* cdef float dt_fn * cdef time_t dt_fn
* cdef unsigned int n_steps = outer_inputs[0].item() # <<<<<<<<<<<<<< * cdef unsigned int n_steps = outer_inputs[0].item() # <<<<<<<<<<<<<<
* cdef unsigned int n_outs = n_mit_mot + n_mit_sot + n_sit_sot * cdef unsigned int n_outs = n_mit_mot + n_mit_sot + n_sit_sot
* cdef unsigned int seqs_arg_offset = n_seqs + 1 * cdef unsigned int seqs_arg_offset = n_seqs + 1
...@@ -3376,7 +3382,7 @@ static PyObject *__pyx_pf_6aesara_4scan_12scan_perform_2perform(CYTHON_UNUSED Py ...@@ -3376,7 +3382,7 @@ static PyObject *__pyx_pf_6aesara_4scan_12scan_perform_2perform(CYTHON_UNUSED Py
__pyx_v_n_steps = __pyx_t_4; __pyx_v_n_steps = __pyx_t_4;
/* "aesara/scan/scan_perform.pyx":171 /* "aesara/scan/scan_perform.pyx":171
* cdef float dt_fn * cdef time_t dt_fn
* cdef unsigned int n_steps = outer_inputs[0].item() * cdef unsigned int n_steps = outer_inputs[0].item()
* cdef unsigned int n_outs = n_mit_mot + n_mit_sot + n_sit_sot # <<<<<<<<<<<<<< * cdef unsigned int n_outs = n_mit_mot + n_mit_sot + n_sit_sot # <<<<<<<<<<<<<<
* cdef unsigned int seqs_arg_offset = n_seqs + 1 * cdef unsigned int seqs_arg_offset = n_seqs + 1
...@@ -5320,36 +5326,14 @@ static PyObject *__pyx_pf_6aesara_4scan_12scan_perform_2perform(CYTHON_UNUSED Py ...@@ -5320,36 +5326,14 @@ static PyObject *__pyx_pf_6aesara_4scan_12scan_perform_2perform(CYTHON_UNUSED Py
/* "aesara/scan/scan_perform.pyx":410 /* "aesara/scan/scan_perform.pyx":410
* *
* # 5.1 compute outputs * # 5.1 compute outputs
* t0_fn = time.time() # <<<<<<<<<<<<<< * t0_fn = time(NULL) # <<<<<<<<<<<<<<
* *
* try: * try:
*/ */
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* *
* try: # <<<<<<<<<<<<<< * try: # <<<<<<<<<<<<<<
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...@@ -5358,10 +5342,10 @@ static PyObject *__pyx_pf_6aesara_4scan_12scan_perform_2perform(CYTHON_UNUSED Py ...@@ -5358,10 +5342,10 @@ static PyObject *__pyx_pf_6aesara_4scan_12scan_perform_2perform(CYTHON_UNUSED Py
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/* "aesara/scan/scan_perform.pyx":413 /* "aesara/scan/scan_perform.pyx":413
...@@ -5372,34 +5356,34 @@ static PyObject *__pyx_pf_6aesara_4scan_12scan_perform_2perform(CYTHON_UNUSED Py ...@@ -5372,34 +5356,34 @@ static PyObject *__pyx_pf_6aesara_4scan_12scan_perform_2perform(CYTHON_UNUSED Py
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...@@ -5417,12 +5401,12 @@ static PyObject *__pyx_pf_6aesara_4scan_12scan_perform_2perform(CYTHON_UNUSED Py ...@@ -5417,12 +5401,12 @@ static PyObject *__pyx_pf_6aesara_4scan_12scan_perform_2perform(CYTHON_UNUSED Py
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{&__pyx_n_s_time, __pyx_k_time, sizeof(__pyx_k_time), 0, 0, 1, 1},
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* *
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static CYTHON_SMALL_CODE int __Pyx_InitGlobals(void) { static CYTHON_SMALL_CODE int __Pyx_InitGlobals(void) {
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/* "aesara/scan/scan_perform.pyx":50 /* "aesara/scan/scan_perform.pyx":49
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* import cython * import sys # <<<<<<<<<<<<<<
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*
* cimport numpy
*/
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* *
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* import time
* import sys
*/ */
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*
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/* "aesara/scan/scan_perform.pyx":58 /* "aesara/scan/scan_perform.pyx":58
* import sys * cimport numpy
* *
* from aesara.scan.utils import InnerFunctionError # <<<<<<<<<<<<<< * from aesara.scan.utils import InnerFunctionError # <<<<<<<<<<<<<<
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aesara/scan/scan_perform.pyx
浏览文件 @ bb999046
...@@ -46,15 +46,15 @@ ...@@ -46,15 +46,15 @@
ones (where applicable). All this information is described (more or less) ones (where applicable). All this information is described (more or less)
by describing the arguments of this function) by describing the arguments of this function)
""" """
import sys
from libc.time cimport time, time_t
import cython import cython
import numpy
import numpy
cimport numpy cimport numpy
import copy
import time
import sys
from aesara.scan.utils import InnerFunctionError from aesara.scan.utils import InnerFunctionError
...@@ -62,7 +62,7 @@ numpy.import_array() ...@@ -62,7 +62,7 @@ numpy.import_array()
def get_version(): def get_version():
return 0.319 return 0.320
# TODO: We need to get rid of the negative indexing performed with `pos` and `l`. # TODO: We need to get rid of the negative indexing performed with `pos` and `l`.
# @cython.wraparound(False) # @cython.wraparound(False)
...@@ -94,7 +94,7 @@ def perform( ...@@ -94,7 +94,7 @@ def perform(
tuple outer_output_dtypes not None, tuple outer_output_dtypes not None,
tuple outer_output_ndims not None, tuple outer_output_ndims not None,
fn, fn,
) -> (float, int): ) -> (time_t, int):
""" """
Parameters Parameters
---------- ----------
...@@ -164,9 +164,9 @@ def perform( ...@@ -164,9 +164,9 @@ def perform(
""" """
# 1. Unzip the number of steps and sequences. If number of steps is # 1. Unzip the number of steps and sequences. If number of steps is
# negative flip sequences around, and make n_steps positive # negative flip sequences around, and make n_steps positive
cdef float t_fn = 0 cdef time_t t_fn = 0
cdef float t0_fn cdef time_t t0_fn
cdef float dt_fn cdef time_t dt_fn
cdef unsigned int n_steps = outer_inputs[0].item() cdef unsigned int n_steps = outer_inputs[0].item()
cdef unsigned int n_outs = n_mit_mot + n_mit_sot + n_sit_sot cdef unsigned int n_outs = n_mit_mot + n_mit_sot + n_sit_sot
cdef unsigned int seqs_arg_offset = n_seqs + 1 cdef unsigned int seqs_arg_offset = n_seqs + 1
...@@ -407,14 +407,14 @@ def perform( ...@@ -407,14 +407,14 @@ def perform(
old_mitmot_input_data[idx] = var.data old_mitmot_input_data[idx] = var.data
# 5.1 compute outputs # 5.1 compute outputs
t0_fn = time.time() t0_fn = time(NULL)
try: try:
fn() fn()
except Exception as exc: except Exception as exc:
raise InnerFunctionError(exc, sys.exc_info()[2]) raise InnerFunctionError(exc, sys.exc_info()[2])
dt_fn = time.time() - t0_fn dt_fn = time(NULL) - t0_fn
t_fn += dt_fn t_fn += dt_fn
if as_while: if as_while:
pdx = offset + n_shared_outs pdx = offset + n_shared_outs
......
aesara/scan/scan_perform_ext.py
浏览文件 @ bb999046
...@@ -23,7 +23,7 @@ if not config.cxx: ...@@ -23,7 +23,7 @@ if not config.cxx:
_logger = logging.getLogger("aesara.scan.scan_perform") _logger = logging.getLogger("aesara.scan.scan_perform")
version = 0.319 # must match constant returned in function get_version() version = 0.320 # must match constant returned in function get_version()
need_reload = False need_reload = False
scan_perform: Optional[ModuleType] = None scan_perform: Optional[ModuleType] = None
......
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