merge

TODO-0.1.txt

 TODO
 
+DIRECTORY LAYOUT
+    * Theano for the distribution directory
+    * Theano/theano for the package
+    * Theano/theano has several submodules:
+        * gof + compile => core
+        * scalar depends upon core
+        * tensor depends upon scalar
+        * sparse depends upon tensor
+        * sandbox can depends on everything else
+    * benchmark and examples are in the distribution, not the package
+    * Tests are distributed and are part of the package, i.e. fall in the appropriate submodules
+    * Documentation scripts go into doc/scripts/
+    * Later on, make a .egg / setuptools script (which should suggest changes
+    to the directory)
+    * Open questions for packaging:
+        * Do we want all scripts in bin/, or can they go in doc/scripts ?
+
 BUGS
     * 0.1 bugs in trac
 
@@ -31,7 +48,13 @@ TRAC
         * Go over and make sure all documentation is current.
         * Need a short version of the page: What is a Graph, for Users
         * Longer version: Graph documentation, for Developers
+    * samples / example code
     * Make sure we have a good sequential list of articles for newbies.
+        * Intro 1
+            * Simple graph
+            * Learn logreg
+            * Now, add state
+            * Different compilation modes
         * WhatWhyHow, merged with WhatIsTheano
         * Simple tutorial / walkthrough / cookbook
             * Use Tensor always, don't bother with Scalars
@@ -45,11 +68,14 @@ TRAC
         * How to Make Tensors
         * IntroToTypes
         * IntroToOps
+        * Want a how to guide for writing tests, and documentation of testing
     * GraphOptimization
         Rewrite. (Assigned to Pascal)
     * HowToDebug
     * HowToMakeOps
     * Fix up InstallationNotes page
+        * Read over and make sure its up-to-date
+        * Describe how to set up PYTHONPATH and suggested directory placement
     * Make a page TipsForSpeed
         * How to enable optimizations
         * How to have the correct BLAS library. [see installation page]
@@ -70,3 +96,4 @@ TRAC
             Proposals + discussions
             Historical proposals + discussion
     * Package 0.1 documentation, so we are free to update it
+        * Convert wiki into sphinx or epydoc.

local.epydoc

@@ -135,7 +135,7 @@ external-api-file: wiki:wiki.idx doc:doc/doc.idx
 # in the output.  Graphs are generated using the Graphviz "dot"
 # executable.  Graph types include: "classtree", "callgraph",
 # "umlclass".  Use "all" to include all graph types
-graph: 
+graph: all
 
 # The path to the Graphviz "dot" executable, used to generate
 # graphs.