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提交 aa62fad6 authored 作者: Christof Angermueller's avatar Christof Angermueller
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Add node profiling colors

上级 726cce89
隐藏空白字符变更
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doc/d3printing/GSoC/150704_profiling/dev.html 0 → 100644
浏览文件 @ aa62fad6
<!DOCTYPE html>
<html>
<head>
<script type="text/javascript" src="http://d3js.org/d3.v3.min.js"></script>
<script type='text/javascript' src="http://cpettitt.github.io/project/dagre-d3/v0.1.5/dagre-d3.min.js"></script>
<script type='text/javascript' src="http://cpettitt.github.io/project/graphlib-dot/v0.4.10/graphlib-dot.min.js"></script>
</head>
<body>
<style>
svg {
margin-left:auto;
margin-right:auto;
display:block;
position: fixed;
border: 0px solid black;
top:5%; left:0%; right:0% bottom=10%
}
.nodeRect {
stroke: black;
border: 3px solid black;
}
.nodeEllipse {
stroke: black;
border: 3px solid black;
}
.nodeText {
color: black;
}
.edge {
stroke-width: 3px;
cursor: pointer;
opacity: 0.4;
}
.edgeLabelRect {
stroke: black;
border: 1px solid black;
fill: skyblue;
opacity: 0.9;
}
.edgeLabelText {
fill: black;
text-anchor: start;
}
.arrowHead {
stroke: green;
stroke-width: 1px;
}
.arrowHead_n {
stroke: green;
}
.arrowHead_r {
stroke-width: 3px;
fill: red;
stroke: red;
}
.arrowHead_b {
stroke: dodgerblue;
}
.edgeTooltip {
position: absolute;
text-align: center;
vertical-align: middle;
min-width: 10px;
min-height: 10px;
padding: 5px;
background: lightsteelblue;
border: 1px solid black;
border-radius: 8px;
pointer-events: none;
}
.nodeTooltip {
position: absolute;
text-align: left;
vertical-align: middle;
min-width: 10px;
min-height: 10px;
padding: 5px;
background: lightsteelblue;
border: 1px solid black;
border-radius: 8px;
pointer-events: none;
}
</style>
<div id='menu'>
<input name="resetNodes"
type="button"
value="Reset nodes"
onclick="resetNodes()"/>
<input name="releaseNodes"
type="button"
value="Release nodes"
onclick="releaseNodes()"/>
</div>
<script type="text/javascript">
var path='predict_profiled.dot';
var isProfiled = false;
var colorProfile = false;
// Global attributes
var pad = 10;
d3.select('body').select('svg').remove();
var svg = d3.select('body').append('svg')
.attr('width', '100%')
.attr('height', '95%');
var pane = svg.append('g');
var edgeDiv = d3.select('body').append('div')
.attr('class', 'edgeTooltip')
.style('opacity', 0.0);
var nodeDiv = d3.select('body').append('div')
.attr('class', 'nodeTooltip')
.style('opacity', 0.0);
// Definition head of edges
var markerData = [
{'id': 'n', 'color': 'black'},
{'id': 'r', 'color': 'red'},
{'id': 'b', 'color': 'dodgerblue'}];
svg.append("defs").selectAll('marker').data(markerData).enter().append("marker")
.attr("id", function(d) { return 'edgeArrow_' + d.id;})
.attr("markerWidth", 4)
.attr("markerHeight", 4)
.attr("refX", 2)
.attr("refY", 2)
.attr("orient", "auto")
.append("path")
.attr("d", "M0,0 L4,2 L0,4 Z")
.attr('fill', function(d) { return d.color;});
function toggleColors() {
colorProfile = !colorProfile;
updateNodes();
updateGraph();
}
function textSize(text, attr) {
var t = svg.append('text').text(text);
if (typeof(attr) != 'undefined') {
for (a in attr) {
t.attr(a, attr[a]);
}
}
var bbox = t.node().getBBox();
t.remove();
return bbox;
}
function exists(x) {
return typeof(x) != 'undefined';
}
function replaceAll(str, find, replace) {
return str.replace(new RegExp(find, 'g'), replace);
}
function parseProfile(profile) {
if (typeof(profile) == 'undefined') {
return;
}
profile = profile.replace('[', '');
profile = profile.replace(']', '');
profile = replaceAll(profile, ' ', '');
profile = profile.split(',');
if (profile.length < 2) {
return [];
}
profile = profile.map(function(x) { return parseFloat(x); });
return profile;
}
function profileColor(per) {
var colors = ["#fff5f0","#fee0d2","#fcbba1","#fc9272","#fb6a4a","#ef3b2c","#cb181d","#a50f15","#67000d"];
var s = d3.scale.linear()
.domain([0, 100])
.range([0, colors.length - 1]);
return colors[Math.round(s(per))];
}
function fillColor(d) {
if (colorProfile && typeof(d.value.profile) != 'undefined') {
return profileColor(d.value.profile[2]);
} else {
return typeof(d.value.fillcolor) == 'undefined' ? 'white' : d.value.fillcolor;
}
}
function formatTime(sec) {
var s;
if (sec < 0.1) {
s = (sec * 1000).toFixed(1) + 'ms';
} else {
s = sec.toFixed(1) + 's';
}
return s;
}
function nodeDetails(node) {
var s = '<b>' + node.value.label + '</b>';
var p = node.value.profile;
if (!isNaN(p[0])) {
s += '<br>Total time: ' + formatTime(p[0]);
}
if (!isNaN(p[1])) {
s += '<br>Total time: ' + p[1].toFixed(1) + '%';
}
if (!isNaN(p[2])) {
s += '<br>Profile time: ' + p[2].toFixed(1) + '%';
}
return s;
}
function updateNode(d, node) {
var shape;
if (d.value.shape == 'ellipse') {
node.selectAll('ellipse').remove();
shape = node.append('ellipse')
.attr('class', 'nodeEllipse')
.attr('cx', d.value.cx)
.attr('cy', d.value.cy)
.attr('rx', d.value.width * 0.6)
.attr('ry', d.value.height * 0.6);
} else {
node.selectAll('rect').remove();
shape = node.append('rect')
.attr('class', 'nodeRect')
.attr('width', d.value.width)
.attr('height', d.value.height);
}
shape.attr('fill', fillColor(d));
node.selectAll('text').remove();
var text = node.append('text')
.attr('class', 'nodeText')
.attr('x', pad)
.attr('dy', function(d) {return d.value.height - pad - 5;})
.text(function(d) {return d.value.label;});
}
function updateNodes() {
nodes.each(function(d) {var node = d3.select(this); updateNode(d, node);});
}
var dotGraph;
var graph = {};
var nodes = [];
var edges = [];
var layout;
var scaleDotX;
var scaleDotY;
d3.text(path, function(data) {
dotGraph = graphlibDot.parse(data);
// Calculate width and height
var posMax = [0, 0];
for (var nodeId in dotGraph._nodes) {
var node = dotGraph._nodes[nodeId];
node.value.label = node.id;
node.value.pos = node.value.pos.split(',').map(function(d) {return parseInt(d);});
node.value.width = parseInt(node.value.width);
node.value.height = parseInt(node.value.height);
posMax[0] = Math.max(posMax[0], node.value.pos[0] + node.value.width);
posMax[1] = Math.max(posMax[1], node.value.pos[1] + node.value.height);
}
dotWidth = posMax[0];
dotHeight = posMax[1];
//svg.attr('viewBox', '0,0,' + dotWidth + ',' + dotHeight);
scaleDotX = d3.scale.linear().domain([0, dotWidth]).range([20, dotWidth * 1.2]);
scaleDotY = d3.scale.linear().domain([0, dotHeight]).range([20, dotHeight * 1.2]);
// Parse nodes
var i = 0;
for (nodeId in dotGraph._nodes) {
var node = dotGraph._nodes[nodeId];
node.index = i++;
// x, y is center of node (not corner)
node.x = scaleDotX(node.value.pos[0]);
node.y = scaleDotY(dotHeight - (node.value.pos[1] + node.value.height));
var size = textSize(node.value.label, {'class': 'nodeText'});
node.value.width = size.width + 2 * pad;
node.value.height = size.height + 2 * pad;
node.value.cx = node.value.width / 2;
node.value.cy = node.value.height / 2;
node.value.profile = parseProfile(node.value.profile);
if (typeof(node.value.profile) != 'undefined') {
isProfiled = true;
}
node.fixed = true;
nodes.push(node);
dotGraph._nodes[nodeId] = node;
}
if (isProfiled) {
d3.select('body').select('#menu').append('input')
.attr('name', 'tColors')
.attr('type', 'button')
.attr('value', 'Toggle profile colors')
.attr('onclick', "toggleColors()");
}
// Parse edges
for (edgeId in dotGraph._edges) {
var edge = dotGraph._edges[edgeId];
edge.source = dotGraph._nodes[edge.u].index;
edge.target = dotGraph._nodes[edge.v].index;
var size = textSize(edge.value.label, {'class': 'edgeLabelText'});
edge.value.width = size.width + 2 * pad;
edge.value.height = size.height + 2 * pad;
if (!exists(edge.value.color)) {
edge.value.color = 'black';
}
switch (edge.value.color) {
case 'dodgerblue':
edge.value.type = 'b';
break;
case 'red':
edge.value.type = 'r';
break;
default:
edge.value.type = 'n';
}
edges.push(edge);
dotGraph._edges[edgeId] = edge;
}
// Setup graph
graph['nodes'] = nodes;
graph['edges'] = edges;
var isEdgeOver = false;
var isEdgeLabelOver = false;
// Add edges
edges = pane.append('g').attr('id', 'edges').selectAll('path').data(graph['edges']).enter().append('path')
.attr('class', 'edge')
.attr('stroke', function(d) {return d.value.color;})
.attr('marker-mid', function(d) { return 'url(#edgeArrow_' + d.value.type + ')';})
.on('mouseover', function(d) {
var edge = d3.select(this);
edge.transition()
.duration(200)
.style('opacity', 1.0);
edgeDiv.transition()
.duration(200)
.style('opacity', .9);
edgeDiv
.html(d.value.label)
.style('left', (d3.event.pageX) + 'px')
.style('top', (d3.event.pageY - 28) + 'px');
})
.on('mouseout', function(d) {
var edge = d3.select(this);
edge.transition()
.duration(200)
.style('opacity', 0.4);
edgeDiv.transition()
.duration(200)
.style('opacity', 0);
});
// Add nodes
nodes = pane.append('g').attr('id', 'nodes').selectAll('g').data(graph['nodes']).enter().append('g');
function setNodeSize(node) {
var size = textSize(node.value.label, {'class': 'nodeText'});
node.value.width = size.width + 2 * pad;
node.value.height = size.height + 2 * pad;
node.value.cx = node.value.width / 2;
node.value.cy = node.value.height / 2;
}
updateNodes();
function hideNodeDiv() {
nodeDiv.transition()
.duration(200)
.style('opacity', 0);
}
var editNode = false;
nodes.on('dblclick', function(d) {
var pos = this.getBBox();
var node = d3.select(this);
if (d3.event.defaultPrevented) return;
editNode = true;
hideNodeDiv();
var form = node.append('foreignObject')
.attr('x', pos.x)
.attr('y', pos.y)
.attr('width', d.value.width)
.attr('height', 25);
var input = form.append('xhtml:form').append('input')
.attr('style', 'width: ' + d.value.width + 'px')
.attr('value', function() {
this.focus();
return d.value.label;
})
.on('blur', function() {
d.value.label = input.node().value;
setNodeSize(d);
updateNode(d, node);
form.remove(); // TODO: check this
editNode = false;
})
.on('keypress', function() {
if (!d3.event) {
d3.event = window.event;
}
var event = d3.event;
if (event.keyCode == 13) {
if (typeof(event.cancelBubble)) {
event.cancelBubble = true;
}
if (event.stopPropagation) {
event.stopPropagation();
}
event.preventDefault();
d.value.label = input.node().value;
setNodeSize(d);
updateNode(d, node);
form.remove(); // TODO: check this
editNode = false;
}
});
});
nodes.on('mouseover', function(node) {
if (editNode || typeof(node.value.profile) == 'undefined') {
return;
}
edges.each(function (d, i) {
var edge = d3.select(this);
if (d.source == node || d.target == node) {
edge.transition()
.duration(200)
.style('opacity', 1.0);
}
});
nodeDiv.transition()
.duration(200)
.style('opacity', .9);
nodeDiv
.html(nodeDetails(node))
.style('left', (d3.event.pageX) + 30 + 'px')
.style('top', (d3.event.pageY - 28) + 'px');
});
nodes.on('mouseout', function(node) {
edges.each(function (d, i) {
var edge = d3.select(this);
if (d.source.index == node.index || d.target.index == node.index) {
edge.transition()
.duration(200)
.style('opacity', 0.4);
}
});
hideNodeDiv();
});
nodes.on('contextmenu', function(d) {
releaseNode(d);
});
// Zoom and translate event handler
function zoom(d) {
pane.attr('transform', 'translate(' + d3.event.translate + ') scale(' + d3.event.scale + ')');
}
// Force layout
layout = d3.layout.force()
.nodes(graph['nodes'])
.links(graph['edges'])
.size([dotWidth, dotHeight])
.charge(-3000)
.linkDistance(50)
.linkStrength(0.1)
.on('tick', updateGraph);
// Drag behavour
var drag = layout.drag()
.on('dragstart', function(d) {
d3.event.sourceEvent.stopPropagation();
d3.event.sourceEvent.preventDefault();
d.fixed = true;
});
nodes.call(drag);
// Zoom behaviour
var bZoom = d3.behavior.zoom()
.scaleExtent([0.2, 8])
//.on("dblclick.zoom", null)
.on('zoom', zoom);
svg.call(bZoom);
svg.on("dblclick.zoom", null);
// Start force layout
layout.start();
});
function length(x1, y1, x2, y2) {
return Math.sqrt(Math.pow(x1-x2, 2) + Math.pow(y1-y2, 2));
}
function pathPos(x1, y1, x2, y2, c) {
x = (1 - c) * x1 + c * x2;
y = (1 - c) * y1 + c * y2;
p = x + ',' + y;
return p;
}
// Update graph
function updateGraph() {
// Update nodes
nodes.attr('transform', function(d) { return 'translate(' + (d.x - d.value.cx) + ' ' + (d.y - d.value.cy) + ')'; });
// Update edges
edges.attr('d', function(d) {
var dist = 100;
var l = length(d.source.x, d.source.y, d.target.x, d.target.y);
var n = Math.max(2, Math.floor(l / dist));
var marker = [];
for (var i = 1; i < n; ++i) {
marker.push(i / n);
}
var markerPos = marker.map(function(c) {return pathPos(d.source.x, d.source.y, d.target.x, d.target.y, c);});
var markerPos = ' L' + markerPos.join(' L');
return 'M' + d.source.x + ',' + d.source.y + markerPos + ' L' + d.target.x + ',' + d.target.y;
});
}
function releaseNode(d) {
d.fixed = false;
layout.start();
}
function releaseNodes() {
graph['nodes'].forEach (function (d) {
d.fixed = false;
});
layout.start();
}
function resetNodes() {
layout.stop();
var nodes = graph['nodes'];
nodes.forEach(function (node, i){
nodes[i].x = scaleDotX(node.value.pos[0]);
nodes[i].y = scaleDotY(dotHeight - (node.value.pos[1] + node.value.height));
nodes[i].px = nodes[i].x;
nodes[i].py = nodes[i].y;
nodes[i].fixed = true;
});
updateGraph();
layout.start();
}
</script>
</body>
</html>
doc/d3printing/GSoC/150704_profiling/index.html 0 → 100644
浏览文件 @ aa62fad6
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doc/d3printing/GSoC/150704_profiling/index.ipynb 0 → 100644
浏览文件 @ aa62fad6
{
"cells": [
{
"cell_type": "code",
"execution_count": 1,
"metadata": {
"collapsed": false
},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"Couldn't import dot_parser, loading of dot files will not be possible.\n"
]
}
],
"source": [
"import numpy\n",
"import numpy.random as rng\n",
"import theano\n",
"import theano.tensor as T\n",
"import theano.printing as pr\n",
"import theano.d3printing as d3p\n",
"from theano.d3printing.formatting import GraphFormatter\n",
"from theano import ProfileMode\n",
"import pydot as pd\n",
"\n",
"from IPython.display import SVG"
]
},
{
"cell_type": "code",
"execution_count": 2,
"metadata": {
"collapsed": false
},
"outputs": [],
"source": [
"%load_ext autoreload\n",
"%autoreload 2"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"# Model "
]
},
{
"cell_type": "code",
"execution_count": 3,
"metadata": {
"collapsed": false
},
"outputs": [],
"source": [
"n = 100\n",
"m = 50\n",
"h = 10\n",
"\n",
"W = theano.shared(np.random.normal(0, 1, (m, h)).astype(theano.config.floatX), borrow=True)\n",
"X = T.dmatrix('X')\n",
"Z = T.nnet.sigmoid(T.dot(X, W))\n",
"zm = T.mean(Z)\n",
"\n",
"predict_profiled = theano.function([X], [Z, zm], profile=True)\n",
"data = rng.rand(n, m)\n",
"dZ, dzm = predict_profiled(data)\n",
"\n",
"predict_unprofiled = theano.function([X], [Z, zm], profile=False)"
]
},
{
"cell_type": "code",
"execution_count": 4,
"metadata": {
"collapsed": true
},
"outputs": [],
"source": [
"gf = GraphFormatter()"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"# Profiled graphed "
]
},
{
"cell_type": "code",
"execution_count": 5,
"metadata": {
"collapsed": false
},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"The output file is available at predict_profiled.html\n"
]
}
],
"source": [
"g = gf.to_pydot(predict_profiled)\n",
"d3p.d3print(predict_profiled, 'predict_profiled.html')"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"[open](./predict_profiled.html) "
]
},
{
"cell_type": "code",
"execution_count": 6,
"metadata": {
"collapsed": false
},
"outputs": [
{
"data": {
"image/svg+xml": [
"<svg height=\"592pt\" viewBox=\"0.00 0.00 931.00 592.00\" width=\"931pt\" xmlns=\"http://www.w3.org/2000/svg\" xmlns:xlink=\"http://www.w3.org/1999/xlink\">\n",
"<g class=\"graph\" id=\"graph0\" transform=\"scale(1 1) rotate(0) translate(4 588)\">\n",
"<title>G</title>\n",
"<polygon fill=\"white\" points=\"-4,4 -4,-588 927,-588 927,4 -4,4\" stroke=\"none\"/>\n",
"<!-- Shape_i{1} -->\n",
"<g class=\"node\" id=\"node1\"><title>Shape_i{1}</title>\n",
"<ellipse cx=\"763\" cy=\"-478\" fill=\"cyan\" rx=\"52.9443\" ry=\"18\" stroke=\"black\"/>\n",
"<text font-family=\"Times,serif\" font-size=\"14.00\" text-anchor=\"middle\" x=\"763\" y=\"-474.3\">Shape_i{1}</text>\n",
"</g>\n",
"<!-- MakeVector -->\n",
"<g class=\"node\" id=\"node6\"><title>MakeVector</title>\n",
"<ellipse cx=\"602\" cy=\"-390\" fill=\"none\" rx=\"55.3436\" ry=\"18\" stroke=\"black\"/>\n",
"<text font-family=\"Times,serif\" font-size=\"14.00\" text-anchor=\"middle\" x=\"602\" y=\"-386.3\">MakeVector</text>\n",
"</g>\n",
"<!-- Shape_i{1}&#45;&gt;MakeVector -->\n",
"<g class=\"edge\" id=\"edge6\"><title>Shape_i{1}-&gt;MakeVector</title>\n",
"<path d=\"M735.689,-462.411C708.974,-448.141 668.114,-426.315 638.598,-410.549\" fill=\"none\" stroke=\"black\"/>\n",
"<polygon fill=\"black\" points=\"639.915,-407.285 629.445,-405.66 636.617,-413.459 639.915,-407.285\" stroke=\"black\"/>\n",
"<text font-family=\"Times,serif\" font-size=\"14.00\" text-anchor=\"middle\" x=\"775\" y=\"-430.3\">1 TensorType(int64, scalar)</text>\n",
"</g>\n",
"<!-- TensorType(float64, matrix) -->\n",
"<g class=\"node\" id=\"node2\"><title>TensorType(float64, matrix)</title>\n",
"<polygon fill=\"limegreen\" points=\"728,-584 552,-584 552,-548 728,-548 728,-584\" stroke=\"black\"/>\n",
"<text font-family=\"Times,serif\" font-size=\"14.00\" text-anchor=\"middle\" x=\"640\" y=\"-562.3\">TensorType(float64, matrix)</text>\n",
"</g>\n",
"<!-- TensorType(float64, matrix)&#45;&gt;Shape_i{1} -->\n",
"<g class=\"edge\" id=\"edge1\"><title>TensorType(float64, matrix)-&gt;Shape_i{1}</title>\n",
"<path d=\"M728.218,-549.113C737.934,-544.301 746.871,-538.067 754,-530 759.757,-523.486 762.449,-514.618 763.57,-506.103\" fill=\"none\" stroke=\"black\"/>\n",
"<polygon fill=\"black\" points=\"767.066,-506.289 764.259,-496.073 760.082,-505.81 767.066,-506.289\" stroke=\"black\"/>\n",
"<text font-family=\"Times,serif\" font-size=\"14.00\" text-anchor=\"middle\" x=\"843\" y=\"-518.3\">TensorType(float64, matrix)</text>\n",
"</g>\n",
"<!-- Dot22 -->\n",
"<g class=\"node\" id=\"node5\"><title>Dot22</title>\n",
"<ellipse cx=\"242\" cy=\"-478\" fill=\"none\" rx=\"33.1991\" ry=\"18\" stroke=\"black\"/>\n",
"<text font-family=\"Times,serif\" font-size=\"14.00\" text-anchor=\"middle\" x=\"242\" y=\"-474.3\">Dot22</text>\n",
"</g>\n",
"<!-- TensorType(float64, matrix)&#45;&gt;Dot22 -->\n",
"<g class=\"edge\" id=\"edge4\"><title>TensorType(float64, matrix)-&gt;Dot22</title>\n",
"<path d=\"M610.316,-547.87C600.623,-542.227 589.827,-535.889 580,-530 568.361,-523.026 566.88,-518.266 554,-514 467.597,-485.383 440.342,-507.083 350,-496 328.021,-493.304 303.645,-489.534 283.621,-486.23\" fill=\"none\" stroke=\"black\"/>\n",
"<polygon fill=\"black\" points=\"284.023,-482.749 273.583,-484.552 282.869,-489.653 284.023,-482.749\" stroke=\"black\"/>\n",
"<text font-family=\"Times,serif\" font-size=\"14.00\" text-anchor=\"middle\" x=\"665\" y=\"-518.3\">1 TensorType(float64, matrix)</text>\n",
"</g>\n",
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"text/plain": [
"<IPython.core.display.SVG object>"
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},
"execution_count": 6,
"metadata": {},
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}
],
"source": [
"SVG(g.create_svg())"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"# Unprofiled graph"
]
},
{
"cell_type": "code",
"execution_count": 7,
"metadata": {
"collapsed": false
},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"The output file is available at predict_unprofiled.html\n"
]
}
],
"source": [
"g = gf.to_pydot(predict_unprofiled)\n",
"d3p.d3print(predict_unprofiled, 'predict_unprofiled.html')"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"[open](./predict_unprofiled.html) "
]
},
{
"cell_type": "code",
"execution_count": 8,
"metadata": {
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{
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doc/d3printing/GSoC/150704_profiling/predict_profiled.dot 0 → 100644
浏览文件 @ aa62fad6
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height=0.5,
pos="462,18",
profile="[0.0, None, 0.0]",
shape=box,
style=filled,
width=2.8889];
"Elemwise{Composite{((i0 / i1) / i2)}}[(0, 0)]" -> "TensorType(float64, scalar) id=13" [label="TensorType(float64, scalar)",
lp="540,62",
pos="e,462,36.084 462,87.597 462,75.746 462,59.817 462,46.292"];
}
doc/d3printing/GSoC/150704_profiling/predict_profiled.html 0 → 100644
浏览文件 @ aa62fad6
<!DOCTYPE html>
<html>
<head>
<script type="text/javascript" src="http://d3js.org/d3.v3.min.js"></script>
<script type='text/javascript' src="http://cpettitt.github.io/project/dagre-d3/v0.1.5/dagre-d3.min.js"></script>
<script type='text/javascript' src="http://cpettitt.github.io/project/graphlib-dot/v0.4.10/graphlib-dot.min.js"></script>
</head>
<body>
<style>
svg {
margin-left:auto;
margin-right:auto;
display:block;
position: fixed;
border: 0px solid black;
top:5%; left:0%; right:0% bottom=10%
}
.nodeRect {
stroke: black;
border: 3px solid black;
}
.nodeEllipse {
stroke: black;
border: 3px solid black;
}
.nodeText {
color: black;
}
.edge {
stroke-width: 3px;
cursor: pointer;
opacity: 0.4;
}
.edgeLabelRect {
stroke: black;
border: 1px solid black;
fill: skyblue;
opacity: 0.9;
}
.edgeLabelText {
fill: black;
text-anchor: start;
}
.arrowHead {
stroke: green;
stroke-width: 1px;
}
.arrowHead_n {
stroke: green;
}
.arrowHead_r {
stroke-width: 3px;
fill: red;
stroke: red;
}
.arrowHead_b {
stroke: dodgerblue;
}
.edgeTooltip {
position: absolute;
text-align: center;
vertical-align: middle;
min-width: 10px;
min-height: 10px;
padding: 5px;
background: lightsteelblue;
border: 1px solid black;
border-radius: 8px;
pointer-events: none;
}
.nodeTooltip {
position: absolute;
text-align: left;
vertical-align: middle;
min-width: 10px;
min-height: 10px;
padding: 5px;
background: lightsteelblue;
border: 1px solid black;
border-radius: 8px;
pointer-events: none;
}
</style>
<div id='menu'>
<input name="resetNodes"
type="button"
value="Reset nodes"
onclick="resetNodes()"/>
<input name="releaseNodes"
type="button"
value="Release nodes"
onclick="releaseNodes()"/>
</div>
<script type="text/javascript">
var path='predict_profiled.dot';
var isProfiled = false;
var colorProfile = false;
// Global attributes
var pad = 10;
d3.select('body').select('svg').remove();
var svg = d3.select('body').append('svg')
.attr('width', '100%')
.attr('height', '95%');
var pane = svg.append('g');
var edgeDiv = d3.select('body').append('div')
.attr('class', 'edgeTooltip')
.style('opacity', 0.0);
var nodeDiv = d3.select('body').append('div')
.attr('class', 'nodeTooltip')
.style('opacity', 0.0);
// Definition head of edges
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{'id': 'n', 'color': 'black'},
{'id': 'r', 'color': 'red'},
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.attr("markerWidth", 4)
.attr("markerHeight", 4)
.attr("refX", 2)
.attr("refY", 2)
.attr("orient", "auto")
.append("path")
.attr("d", "M0,0 L4,2 L0,4 Z")
.attr('fill', function(d) { return d.color;});
function toggleColors() {
colorProfile = !colorProfile;
updateNodes();
updateGraph();
}
function textSize(text, attr) {
var t = svg.append('text').text(text);
if (typeof(attr) != 'undefined') {
for (a in attr) {
t.attr(a, attr[a]);
}
}
var bbox = t.node().getBBox();
t.remove();
return bbox;
}
function exists(x) {
return typeof(x) != 'undefined';
}
function replaceAll(str, find, replace) {
return str.replace(new RegExp(find, 'g'), replace);
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function parseProfile(profile) {
if (typeof(profile) == 'undefined') {
return;
}
profile = profile.replace('[', '');
profile = profile.replace(']', '');
profile = replaceAll(profile, ' ', '');
profile = profile.split(',');
if (profile.length < 2) {
return [];
}
profile = profile.map(function(x) { return parseFloat(x); });
return profile;
}
function profileColor(per) {
var colors = ["#fff5f0","#fee0d2","#fcbba1","#fc9272","#fb6a4a","#ef3b2c","#cb181d","#a50f15","#67000d"];
var s = d3.scale.linear()
.domain([0, 100])
.range([0, colors.length - 1]);
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function fillColor(d) {
if (colorProfile && typeof(d.value.profile) != 'undefined') {
return profileColor(d.value.profile[2]);
} else {
return typeof(d.value.fillcolor) == 'undefined' ? 'white' : d.value.fillcolor;
}
}
function formatTime(sec) {
var s;
if (sec < 0.1) {
s = (sec * 1000).toFixed(1) + 'ms';
} else {
s = sec.toFixed(1) + 's';
}
return s;
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function nodeDetails(node) {
var s = '<b>' + node.value.label + '</b>';
var p = node.value.profile;
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s += '<br>Total time: ' + formatTime(p[0]);
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if (!isNaN(p[1])) {
s += '<br>Total time: ' + p[1].toFixed(1) + '%';
}
if (!isNaN(p[2])) {
s += '<br>Profile time: ' + p[2].toFixed(1) + '%';
}
return s;
}
function updateNode(d, node) {
var shape;
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node.selectAll('ellipse').remove();
shape = node.append('ellipse')
.attr('class', 'nodeEllipse')
.attr('cx', d.value.cx)
.attr('cy', d.value.cy)
.attr('rx', d.value.width * 0.6)
.attr('ry', d.value.height * 0.6);
} else {
node.selectAll('rect').remove();
shape = node.append('rect')
.attr('class', 'nodeRect')
.attr('width', d.value.width)
.attr('height', d.value.height);
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shape.attr('fill', fillColor(d));
node.selectAll('text').remove();
var text = node.append('text')
.attr('class', 'nodeText')
.attr('x', pad)
.attr('dy', function(d) {return d.value.height - pad - 5;})
.text(function(d) {return d.value.label;});
}
function updateNodes() {
nodes.each(function(d) {var node = d3.select(this); updateNode(d, node);});
}
var dotGraph;
var graph = {};
var nodes = [];
var edges = [];
var layout;
var scaleDotX;
var scaleDotY;
d3.text(path, function(data) {
dotGraph = graphlibDot.parse(data);
// Calculate width and height
var posMax = [0, 0];
for (var nodeId in dotGraph._nodes) {
var node = dotGraph._nodes[nodeId];
node.value.label = node.id;
node.value.pos = node.value.pos.split(',').map(function(d) {return parseInt(d);});
node.value.width = parseInt(node.value.width);
node.value.height = parseInt(node.value.height);
posMax[0] = Math.max(posMax[0], node.value.pos[0] + node.value.width);
posMax[1] = Math.max(posMax[1], node.value.pos[1] + node.value.height);
}
dotWidth = posMax[0];
dotHeight = posMax[1];
//svg.attr('viewBox', '0,0,' + dotWidth + ',' + dotHeight);
scaleDotX = d3.scale.linear().domain([0, dotWidth]).range([20, dotWidth * 1.2]);
scaleDotY = d3.scale.linear().domain([0, dotHeight]).range([20, dotHeight * 1.2]);
// Parse nodes
var i = 0;
for (nodeId in dotGraph._nodes) {
var node = dotGraph._nodes[nodeId];
node.index = i++;
// x, y is center of node (not corner)
node.x = scaleDotX(node.value.pos[0]);
node.y = scaleDotY(dotHeight - (node.value.pos[1] + node.value.height));
var size = textSize(node.value.label, {'class': 'nodeText'});
node.value.width = size.width + 2 * pad;
node.value.height = size.height + 2 * pad;
node.value.cx = node.value.width / 2;
node.value.cy = node.value.height / 2;
node.value.profile = parseProfile(node.value.profile);
if (typeof(node.value.profile) != 'undefined') {
isProfiled = true;
}
node.fixed = true;
nodes.push(node);
dotGraph._nodes[nodeId] = node;
}
if (isProfiled) {
d3.select('body').select('#menu').append('input')
.attr('name', 'tColors')
.attr('type', 'button')
.attr('value', 'Toggle profile colors')
.attr('onclick', "toggleColors()");
}
// Parse edges
for (edgeId in dotGraph._edges) {
var edge = dotGraph._edges[edgeId];
edge.source = dotGraph._nodes[edge.u].index;
edge.target = dotGraph._nodes[edge.v].index;
var size = textSize(edge.value.label, {'class': 'edgeLabelText'});
edge.value.width = size.width + 2 * pad;
edge.value.height = size.height + 2 * pad;
if (!exists(edge.value.color)) {
edge.value.color = 'black';
}
switch (edge.value.color) {
case 'dodgerblue':
edge.value.type = 'b';
break;
case 'red':
edge.value.type = 'r';
break;
default:
edge.value.type = 'n';
}
edges.push(edge);
dotGraph._edges[edgeId] = edge;
}
// Setup graph
graph['nodes'] = nodes;
graph['edges'] = edges;
var isEdgeOver = false;
var isEdgeLabelOver = false;
// Add edges
edges = pane.append('g').attr('id', 'edges').selectAll('path').data(graph['edges']).enter().append('path')
.attr('class', 'edge')
.attr('stroke', function(d) {return d.value.color;})
.attr('marker-mid', function(d) { return 'url(#edgeArrow_' + d.value.type + ')';})
.on('mouseover', function(d) {
var edge = d3.select(this);
edge.transition()
.duration(200)
.style('opacity', 1.0);
edgeDiv.transition()
.duration(200)
.style('opacity', .9);
edgeDiv
.html(d.value.label)
.style('left', (d3.event.pageX) + 'px')
.style('top', (d3.event.pageY - 28) + 'px');
})
.on('mouseout', function(d) {
var edge = d3.select(this);
edge.transition()
.duration(200)
.style('opacity', 0.4);
edgeDiv.transition()
.duration(200)
.style('opacity', 0);
});
// Add nodes
nodes = pane.append('g').attr('id', 'nodes').selectAll('g').data(graph['nodes']).enter().append('g');
function setNodeSize(node) {
var size = textSize(node.value.label, {'class': 'nodeText'});
node.value.width = size.width + 2 * pad;
node.value.height = size.height + 2 * pad;
node.value.cx = node.value.width / 2;
node.value.cy = node.value.height / 2;
}
updateNodes();
function hideNodeDiv() {
nodeDiv.transition()
.duration(200)
.style('opacity', 0);
}
var editNode = false;
nodes.on('dblclick', function(d) {
var pos = this.getBBox();
var node = d3.select(this);
if (d3.event.defaultPrevented) return;
editNode = true;
hideNodeDiv();
var form = node.append('foreignObject')
.attr('x', pos.x)
.attr('y', pos.y)
.attr('width', d.value.width)
.attr('height', 25);
var input = form.append('xhtml:form').append('input')
.attr('style', 'width: ' + d.value.width + 'px')
.attr('value', function() {
this.focus();
return d.value.label;
})
.on('blur', function() {
d.value.label = input.node().value;
setNodeSize(d);
updateNode(d, node);
form.remove(); // TODO: check this
editNode = false;
})
.on('keypress', function() {
if (!d3.event) {
d3.event = window.event;
}
var event = d3.event;
if (event.keyCode == 13) {
if (typeof(event.cancelBubble)) {
event.cancelBubble = true;
}
if (event.stopPropagation) {
event.stopPropagation();
}
event.preventDefault();
d.value.label = input.node().value;
setNodeSize(d);
updateNode(d, node);
form.remove(); // TODO: check this
editNode = false;
}
});
});
nodes.on('mouseover', function(node) {
if (editNode || typeof(node.value.profile) == 'undefined') {
return;
}
edges.each(function (d, i) {
var edge = d3.select(this);
if (d.source == node || d.target == node) {
edge.transition()
.duration(200)
.style('opacity', 1.0);
}
});
nodeDiv.transition()
.duration(200)
.style('opacity', .9);
nodeDiv
.html(nodeDetails(node))
.style('left', (d3.event.pageX) + 30 + 'px')
.style('top', (d3.event.pageY - 28) + 'px');
});
nodes.on('mouseout', function(node) {
edges.each(function (d, i) {
var edge = d3.select(this);
if (d.source.index == node.index || d.target.index == node.index) {
edge.transition()
.duration(200)
.style('opacity', 0.4);
}
});
hideNodeDiv();
});
nodes.on('contextmenu', function(d) {
releaseNode(d);
});
// Zoom and translate event handler
function zoom(d) {
pane.attr('transform', 'translate(' + d3.event.translate + ') scale(' + d3.event.scale + ')');
}
// Force layout
layout = d3.layout.force()
.nodes(graph['nodes'])
.links(graph['edges'])
.size([dotWidth, dotHeight])
.charge(-3000)
.linkDistance(50)
.linkStrength(0.1)
.on('tick', updateGraph);
// Drag behavour
var drag = layout.drag()
.on('dragstart', function(d) {
d3.event.sourceEvent.stopPropagation();
d3.event.sourceEvent.preventDefault();
d.fixed = true;
});
nodes.call(drag);
// Zoom behaviour
var bZoom = d3.behavior.zoom()
.scaleExtent([0.2, 8])
//.on("dblclick.zoom", null)
.on('zoom', zoom);
svg.call(bZoom);
svg.on("dblclick.zoom", null);
// Start force layout
layout.start();
});
function length(x1, y1, x2, y2) {
return Math.sqrt(Math.pow(x1-x2, 2) + Math.pow(y1-y2, 2));
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x = (1 - c) * x1 + c * x2;
y = (1 - c) * y1 + c * y2;
p = x + ',' + y;
return p;
}
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function updateGraph() {
// Update nodes
nodes.attr('transform', function(d) { return 'translate(' + (d.x - d.value.cx) + ' ' + (d.y - d.value.cy) + ')'; });
// Update edges
edges.attr('d', function(d) {
var dist = 100;
var l = length(d.source.x, d.source.y, d.target.x, d.target.y);
var n = Math.max(2, Math.floor(l / dist));
var marker = [];
for (var i = 1; i < n; ++i) {
marker.push(i / n);
}
var markerPos = marker.map(function(c) {return pathPos(d.source.x, d.source.y, d.target.x, d.target.y, c);});
var markerPos = ' L' + markerPos.join(' L');
return 'M' + d.source.x + ',' + d.source.y + markerPos + ' L' + d.target.x + ',' + d.target.y;
});
}
function releaseNode(d) {
d.fixed = false;
layout.start();
}
function releaseNodes() {
graph['nodes'].forEach (function (d) {
d.fixed = false;
});
layout.start();
}
function resetNodes() {
layout.stop();
var nodes = graph['nodes'];
nodes.forEach(function (node, i){
nodes[i].x = scaleDotX(node.value.pos[0]);
nodes[i].y = scaleDotY(dotHeight - (node.value.pos[1] + node.value.height));
nodes[i].px = nodes[i].x;
nodes[i].py = nodes[i].y;
nodes[i].fixed = true;
});
updateGraph();
layout.start();
}
</script>
</body>
</html>
doc/d3printing/GSoC/150704_profiling/predict_unprofiled.dot 0 → 100644
浏览文件 @ aa62fad6
digraph G {
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node [label="\N"];
"Shape_i{1}" [fillcolor=cyan,
height=0.5,
pos="763,478",
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MakeVector [height=0.5,
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"Shape_i{1}" -> MakeVector [label="1 TensorType(int64, scalar)",
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pos="640,566",
shape=box,
style=filled,
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"TensorType(float64, matrix)" -> "Shape_i{1}" [label="TensorType(float64, matrix)",
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"TensorType(float64, matrix)" -> Dot22 [label="1 TensorType(float64, matrix)",
lp="665,522",
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"Shape_i{0}" -> MakeVector [label="0 TensorType(int64, scalar)",
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"name=X TensorType(float64, matrix)" [fillcolor=limegreen,
height=0.5,
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shape=box,
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"name=X TensorType(float64, matrix)" -> "Shape_i{0}" [label="TensorType(float64, matrix)",
lp="470,522",
pos="e,402.12,495.7 361.08,547.9 366.78,542.42 372.87,536.17 378,530 384.67,521.98 391.21,512.63 396.75,504.15"];
"name=X TensorType(float64, matrix)" -> Dot22 [label="0 TensorType(float64, matrix)",
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"Elemwise{ScalarSigmoid}[(0, 0)]" [fillcolor="#FFAABB",
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Dot22 -> "Elemwise{ScalarSigmoid}[(0, 0)]" [color=red,
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"Subtensor{int64}" [fillcolor="#FFAAFF",
height=0.5,
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"Elemwise{Cast{float64}}" -> "Subtensor{int64}" [color=dodgerblue,
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"Elemwise{Composite{((i0 / i1) / i2)}}[(0, 0)]" [fillcolor="#FFAABB",
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style=filled,
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width=4.8998];
"Sum{acc_dtype=float64}" -> "Elemwise{Composite{((i0 / i1) / i2)}}[(0, 0)]" [color=red,
label="0 TensorType(float64, scalar)",
lp="275.5,194",
pos="e,366.69,121.17 119.53,230.18 136.35,214 163.86,190 192,176 243.47,150.38 305.34,133.68 356.86,123.14"];
"Subtensor{int64}" -> "Elemwise{Composite{((i0 / i1) / i2)}}[(0, 0)]" [label="2 TensorType(float64, scalar)",
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"val=1 int64" [fillcolor=limegreen,
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"val=1 int64" -> "Subtensor{int64}" [label="1 int64",
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"Subtensor{int64} id=8" -> "Elemwise{Composite{((i0 / i1) / i2)}}[(0, 0)]" [label="1 TensorType(float64, scalar)",
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pos="e,462,124.08 462,175.6 462,163.75 462,147.82 462,134.29"];
"val=0 int64" [fillcolor=limegreen,
height=0.5,
pos="415,302",
shape=box,
style=filled,
width=1.1181];
"val=0 int64" -> "Subtensor{int64} id=8" [label="1 int64",
lp="436,248",
pos="e,432.27,211.35 411.23,283.95 408.81,268.91 407.5,246.84 416,230 418.2,225.64 421.23,221.67 424.69,218.1"];
"TensorType(float64, scalar) id=13" [fillcolor=dodgerblue,
height=0.5,
pos="462,18",
shape=box,
style=filled,
width=2.8889];
"Elemwise{Composite{((i0 / i1) / i2)}}[(0, 0)]" -> "TensorType(float64, scalar) id=13" [label="TensorType(float64, scalar)",
lp="540,62",
pos="e,462,36.084 462,87.597 462,75.746 462,59.817 462,46.292"];
}
doc/d3printing/GSoC/150704_profiling/predict_unprofiled.html 0 → 100644
浏览文件 @ aa62fad6
<!DOCTYPE html>
<html>
<head>
<script type="text/javascript" src="http://d3js.org/d3.v3.min.js"></script>
<script type='text/javascript' src="http://cpettitt.github.io/project/dagre-d3/v0.1.5/dagre-d3.min.js"></script>
<script type='text/javascript' src="http://cpettitt.github.io/project/graphlib-dot/v0.4.10/graphlib-dot.min.js"></script>
</head>
<body>
<style>
svg {
margin-left:auto;
margin-right:auto;
display:block;
position: fixed;
border: 0px solid black;
top:5%; left:0%; right:0% bottom=10%
}
.nodeRect {
stroke: black;
border: 3px solid black;
}
.nodeEllipse {
stroke: black;
border: 3px solid black;
}
.nodeText {
color: black;
}
.edge {
stroke-width: 3px;
cursor: pointer;
opacity: 0.4;
}
.edgeLabelRect {
stroke: black;
border: 1px solid black;
fill: skyblue;
opacity: 0.9;
}
.edgeLabelText {
fill: black;
text-anchor: start;
}
.arrowHead {
stroke: green;
stroke-width: 1px;
}
.arrowHead_n {
stroke: green;
}
.arrowHead_r {
stroke-width: 3px;
fill: red;
stroke: red;
}
.arrowHead_b {
stroke: dodgerblue;
}
.edgeTooltip {
position: absolute;
text-align: center;
vertical-align: middle;
min-width: 10px;
min-height: 10px;
padding: 5px;
background: lightsteelblue;
border: 1px solid black;
border-radius: 8px;
pointer-events: none;
}
.nodeTooltip {
position: absolute;
text-align: left;
vertical-align: middle;
min-width: 10px;
min-height: 10px;
padding: 5px;
background: lightsteelblue;
border: 1px solid black;
border-radius: 8px;
pointer-events: none;
}
</style>
<div id='menu'>
<input name="resetNodes"
type="button"
value="Reset nodes"
onclick="resetNodes()"/>
<input name="releaseNodes"
type="button"
value="Release nodes"
onclick="releaseNodes()"/>
</div>
<script type="text/javascript">
var path='predict_unprofiled.dot';
var isProfiled = false;
var colorProfile = false;
// Global attributes
var pad = 10;
d3.select('body').select('svg').remove();
var svg = d3.select('body').append('svg')
.attr('width', '100%')
.attr('height', '95%');
var pane = svg.append('g');
var edgeDiv = d3.select('body').append('div')
.attr('class', 'edgeTooltip')
.style('opacity', 0.0);
var nodeDiv = d3.select('body').append('div')
.attr('class', 'nodeTooltip')
.style('opacity', 0.0);
// Definition head of edges
var markerData = [
{'id': 'n', 'color': 'black'},
{'id': 'r', 'color': 'red'},
{'id': 'b', 'color': 'dodgerblue'}];
svg.append("defs").selectAll('marker').data(markerData).enter().append("marker")
.attr("id", function(d) { return 'edgeArrow_' + d.id;})
.attr("markerWidth", 4)
.attr("markerHeight", 4)
.attr("refX", 2)
.attr("refY", 2)
.attr("orient", "auto")
.append("path")
.attr("d", "M0,0 L4,2 L0,4 Z")
.attr('fill', function(d) { return d.color;});
function toggleColors() {
colorProfile = !colorProfile;
updateNodes();
updateGraph();
}
function textSize(text, attr) {
var t = svg.append('text').text(text);
if (typeof(attr) != 'undefined') {
for (a in attr) {
t.attr(a, attr[a]);
}
}
var bbox = t.node().getBBox();
t.remove();
return bbox;
}
function exists(x) {
return typeof(x) != 'undefined';
}
function replaceAll(str, find, replace) {
return str.replace(new RegExp(find, 'g'), replace);
}
function parseProfile(profile) {
if (typeof(profile) == 'undefined') {
return;
}
profile = profile.replace('[', '');
profile = profile.replace(']', '');
profile = replaceAll(profile, ' ', '');
profile = profile.split(',');
if (profile.length < 2) {
return [];
}
profile = profile.map(function(x) { return parseFloat(x); });
return profile;
}
function profileColor(per) {
var colors = ["#fff5f0","#fee0d2","#fcbba1","#fc9272","#fb6a4a","#ef3b2c","#cb181d","#a50f15","#67000d"];
var s = d3.scale.linear()
.domain([0, 100])
.range([0, colors.length - 1]);
return colors[Math.round(s(per))];
}
function fillColor(d) {
if (colorProfile && typeof(d.value.profile) != 'undefined') {
return profileColor(d.value.profile[2]);
} else {
return typeof(d.value.fillcolor) == 'undefined' ? 'white' : d.value.fillcolor;
}
}
function formatTime(sec) {
var s;
if (sec < 0.1) {
s = (sec * 1000).toFixed(1) + 'ms';
} else {
s = sec.toFixed(1) + 's';
}
return s;
}
function nodeDetails(node) {
var s = '<b>' + node.value.label + '</b>';
var p = node.value.profile;
if (!isNaN(p[0])) {
s += '<br>Total time: ' + formatTime(p[0]);
}
if (!isNaN(p[1])) {
s += '<br>Total time: ' + p[1].toFixed(1) + '%';
}
if (!isNaN(p[2])) {
s += '<br>Profile time: ' + p[2].toFixed(1) + '%';
}
return s;
}
function updateNode(d, node) {
var shape;
if (d.value.shape == 'ellipse') {
node.selectAll('ellipse').remove();
shape = node.append('ellipse')
.attr('class', 'nodeEllipse')
.attr('cx', d.value.cx)
.attr('cy', d.value.cy)
.attr('rx', d.value.width * 0.6)
.attr('ry', d.value.height * 0.6);
} else {
node.selectAll('rect').remove();
shape = node.append('rect')
.attr('class', 'nodeRect')
.attr('width', d.value.width)
.attr('height', d.value.height);
}
shape.attr('fill', fillColor(d));
node.selectAll('text').remove();
var text = node.append('text')
.attr('class', 'nodeText')
.attr('x', pad)
.attr('dy', function(d) {return d.value.height - pad - 5;})
.text(function(d) {return d.value.label;});
}
function updateNodes() {
nodes.each(function(d) {var node = d3.select(this); updateNode(d, node);});
}
var dotGraph;
var graph = {};
var nodes = [];
var edges = [];
var layout;
var scaleDotX;
var scaleDotY;
d3.text(path, function(data) {
dotGraph = graphlibDot.parse(data);
// Calculate width and height
var posMax = [0, 0];
for (var nodeId in dotGraph._nodes) {
var node = dotGraph._nodes[nodeId];
node.value.label = node.id;
node.value.pos = node.value.pos.split(',').map(function(d) {return parseInt(d);});
node.value.width = parseInt(node.value.width);
node.value.height = parseInt(node.value.height);
posMax[0] = Math.max(posMax[0], node.value.pos[0] + node.value.width);
posMax[1] = Math.max(posMax[1], node.value.pos[1] + node.value.height);
}
dotWidth = posMax[0];
dotHeight = posMax[1];
//svg.attr('viewBox', '0,0,' + dotWidth + ',' + dotHeight);
scaleDotX = d3.scale.linear().domain([0, dotWidth]).range([20, dotWidth * 1.2]);
scaleDotY = d3.scale.linear().domain([0, dotHeight]).range([20, dotHeight * 1.2]);
// Parse nodes
var i = 0;
for (nodeId in dotGraph._nodes) {
var node = dotGraph._nodes[nodeId];
node.index = i++;
// x, y is center of node (not corner)
node.x = scaleDotX(node.value.pos[0]);
node.y = scaleDotY(dotHeight - (node.value.pos[1] + node.value.height));
var size = textSize(node.value.label, {'class': 'nodeText'});
node.value.width = size.width + 2 * pad;
node.value.height = size.height + 2 * pad;
node.value.cx = node.value.width / 2;
node.value.cy = node.value.height / 2;
node.value.profile = parseProfile(node.value.profile);
if (typeof(node.value.profile) != 'undefined') {
isProfiled = true;
}
node.fixed = true;
nodes.push(node);
dotGraph._nodes[nodeId] = node;
}
if (isProfiled) {
d3.select('body').select('#menu').append('input')
.attr('name', 'tColors')
.attr('type', 'button')
.attr('value', 'Toggle profile colors')
.attr('onclick', "toggleColors()");
}
// Parse edges
for (edgeId in dotGraph._edges) {
var edge = dotGraph._edges[edgeId];
edge.source = dotGraph._nodes[edge.u].index;
edge.target = dotGraph._nodes[edge.v].index;
var size = textSize(edge.value.label, {'class': 'edgeLabelText'});
edge.value.width = size.width + 2 * pad;
edge.value.height = size.height + 2 * pad;
if (!exists(edge.value.color)) {
edge.value.color = 'black';
}
switch (edge.value.color) {
case 'dodgerblue':
edge.value.type = 'b';
break;
case 'red':
edge.value.type = 'r';
break;
default:
edge.value.type = 'n';
}
edges.push(edge);
dotGraph._edges[edgeId] = edge;
}
// Setup graph
graph['nodes'] = nodes;
graph['edges'] = edges;
var isEdgeOver = false;
var isEdgeLabelOver = false;
// Add edges
edges = pane.append('g').attr('id', 'edges').selectAll('path').data(graph['edges']).enter().append('path')
.attr('class', 'edge')
.attr('stroke', function(d) {return d.value.color;})
.attr('marker-mid', function(d) { return 'url(#edgeArrow_' + d.value.type + ')';})
.on('mouseover', function(d) {
var edge = d3.select(this);
edge.transition()
.duration(200)
.style('opacity', 1.0);
edgeDiv.transition()
.duration(200)
.style('opacity', .9);
edgeDiv
.html(d.value.label)
.style('left', (d3.event.pageX) + 'px')
.style('top', (d3.event.pageY - 28) + 'px');
})
.on('mouseout', function(d) {
var edge = d3.select(this);
edge.transition()
.duration(200)
.style('opacity', 0.4);
edgeDiv.transition()
.duration(200)
.style('opacity', 0);
});
// Add nodes
nodes = pane.append('g').attr('id', 'nodes').selectAll('g').data(graph['nodes']).enter().append('g');
function setNodeSize(node) {
var size = textSize(node.value.label, {'class': 'nodeText'});
node.value.width = size.width + 2 * pad;
node.value.height = size.height + 2 * pad;
node.value.cx = node.value.width / 2;
node.value.cy = node.value.height / 2;
}
updateNodes();
function hideNodeDiv() {
nodeDiv.transition()
.duration(200)
.style('opacity', 0);
}
var editNode = false;
nodes.on('dblclick', function(d) {
var pos = this.getBBox();
var node = d3.select(this);
if (d3.event.defaultPrevented) return;
editNode = true;
hideNodeDiv();
var form = node.append('foreignObject')
.attr('x', pos.x)
.attr('y', pos.y)
.attr('width', d.value.width)
.attr('height', 25);
var input = form.append('xhtml:form').append('input')
.attr('style', 'width: ' + d.value.width + 'px')
.attr('value', function() {
this.focus();
return d.value.label;
})
.on('blur', function() {
d.value.label = input.node().value;
setNodeSize(d);
updateNode(d, node);
form.remove(); // TODO: check this
editNode = false;
})
.on('keypress', function() {
if (!d3.event) {
d3.event = window.event;
}
var event = d3.event;
if (event.keyCode == 13) {
if (typeof(event.cancelBubble)) {
event.cancelBubble = true;
}
if (event.stopPropagation) {
event.stopPropagation();
}
event.preventDefault();
d.value.label = input.node().value;
setNodeSize(d);
updateNode(d, node);
form.remove(); // TODO: check this
editNode = false;
}
});
});
nodes.on('mouseover', function(node) {
if (editNode || typeof(node.value.profile) == 'undefined') {
return;
}
edges.each(function (d, i) {
var edge = d3.select(this);
if (d.source == node || d.target == node) {
edge.transition()
.duration(200)
.style('opacity', 1.0);
}
});
nodeDiv.transition()
.duration(200)
.style('opacity', .9);
nodeDiv
.html(nodeDetails(node))
.style('left', (d3.event.pageX) + 30 + 'px')
.style('top', (d3.event.pageY - 28) + 'px');
});
nodes.on('mouseout', function(node) {
edges.each(function (d, i) {
var edge = d3.select(this);
if (d.source.index == node.index || d.target.index == node.index) {
edge.transition()
.duration(200)
.style('opacity', 0.4);
}
});
hideNodeDiv();
});
nodes.on('contextmenu', function(d) {
releaseNode(d);
});
// Zoom and translate event handler
function zoom(d) {
pane.attr('transform', 'translate(' + d3.event.translate + ') scale(' + d3.event.scale + ')');
}
// Force layout
layout = d3.layout.force()
.nodes(graph['nodes'])
.links(graph['edges'])
.size([dotWidth, dotHeight])
.charge(-3000)
.linkDistance(50)
.linkStrength(0.1)
.on('tick', updateGraph);
// Drag behavour
var drag = layout.drag()
.on('dragstart', function(d) {
d3.event.sourceEvent.stopPropagation();
d3.event.sourceEvent.preventDefault();
d.fixed = true;
});
nodes.call(drag);
// Zoom behaviour
var bZoom = d3.behavior.zoom()
.scaleExtent([0.2, 8])
//.on("dblclick.zoom", null)
.on('zoom', zoom);
svg.call(bZoom);
svg.on("dblclick.zoom", null);
// Start force layout
layout.start();
});
function length(x1, y1, x2, y2) {
return Math.sqrt(Math.pow(x1-x2, 2) + Math.pow(y1-y2, 2));
}
function pathPos(x1, y1, x2, y2, c) {
x = (1 - c) * x1 + c * x2;
y = (1 - c) * y1 + c * y2;
p = x + ',' + y;
return p;
}
// Update graph
function updateGraph() {
// Update nodes
nodes.attr('transform', function(d) { return 'translate(' + (d.x - d.value.cx) + ' ' + (d.y - d.value.cy) + ')'; });
// Update edges
edges.attr('d', function(d) {
var dist = 100;
var l = length(d.source.x, d.source.y, d.target.x, d.target.y);
var n = Math.max(2, Math.floor(l / dist));
var marker = [];
for (var i = 1; i < n; ++i) {
marker.push(i / n);
}
var markerPos = marker.map(function(c) {return pathPos(d.source.x, d.source.y, d.target.x, d.target.y, c);});
var markerPos = ' L' + markerPos.join(' L');
return 'M' + d.source.x + ',' + d.source.y + markerPos + ' L' + d.target.x + ',' + d.target.y;
});
}
function releaseNode(d) {
d.fixed = false;
layout.start();
}
function releaseNodes() {
graph['nodes'].forEach (function (d) {
d.fixed = false;
});
layout.start();
}
function resetNodes() {
layout.stop();
var nodes = graph['nodes'];
nodes.forEach(function (node, i){
nodes[i].x = scaleDotX(node.value.pos[0]);
nodes[i].y = scaleDotY(dotHeight - (node.value.pos[1] + node.value.height));
nodes[i].px = nodes[i].x;
nodes[i].py = nodes[i].y;
nodes[i].fixed = true;
});
updateGraph();
layout.start();
}
</script>
</body>
</html>
doc/d3printing/GSoC/150704_profiling/pydot.ipynb 0 → 100644
浏览文件 @ aa62fad6
{
"cells": [
{
"cell_type": "code",
"execution_count": 1,
"metadata": {
"collapsed": false
},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"Couldn't import dot_parser, loading of dot files will not be possible.\n"
]
}
],
"source": [
"import pydot as pd\n",
"from IPython.display import SVG"
]
},
{
"cell_type": "code",
"execution_count": 12,
"metadata": {
"collapsed": true
},
"outputs": [],
"source": [
"g = pd.Dot(graph_type='digraph')\n",
"g.add_node(pd.Node('A', fillcolor='blue', style='filled', shape='box', label='A Label', time=''))\n",
"g.add_node(pd.Node('B', fillcolor='green', shape='ellipse'))\n",
"g.add_edge(pd.Edge('A', 'B', labels='A -> B'))"
]
},
{
"cell_type": "code",
"execution_count": 13,
"metadata": {
"collapsed": false
},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"digraph G {\n",
"\tgraph [bb=\"0,0,62,108\"];\n",
"\tnode [label=\"\\N\"];\n",
"\tA\t [fillcolor=blue,\n",
"\t\theight=0.5,\n",
"\t\tlabel=\"A Label\",\n",
"\t\tpos=\"31,90\",\n",
"\t\tshape=box,\n",
"\t\tstyle=filled,\n",
"\t\twidth=0.86111];\n",
"\tB\t [fillcolor=green,\n",
"\t\theight=0.5,\n",
"\t\tpos=\"31,18\",\n",
"\t\tshape=ellipse,\n",
"\t\twidth=0.75];\n",
"\tA -> B\t [labels=\"A -> B\",\n",
"\t\tpos=\"e,31,36.104 31,71.697 31,63.983 31,54.712 31,46.112\"];\n",
"}\n",
"\n"
]
}
],
"source": [
"print(g.create_dot())"
]
},
{
"cell_type": "code",
"execution_count": 16,
"metadata": {
"collapsed": true
},
"outputs": [],
"source": [
"a = []"
]
},
{
"cell_type": "code",
"execution_count": 17,
"metadata": {
"collapsed": false
},
"outputs": [
{
"data": {
"text/plain": [
"'[]'"
]
},
"execution_count": 17,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"str(a)"
]
},
{
"cell_type": "code",
"execution_count": 4,
"metadata": {
"collapsed": false
},
"outputs": [
{
"data": {
"image/svg+xml": [
"<svg height=\"116pt\" viewBox=\"0.00 0.00 70.00 116.00\" width=\"70pt\" xmlns=\"http://www.w3.org/2000/svg\" xmlns:xlink=\"http://www.w3.org/1999/xlink\">\n",
"<g class=\"graph\" id=\"graph0\" transform=\"scale(1 1) rotate(0) translate(4 112)\">\n",
"<title>G</title>\n",
"<polygon fill=\"white\" points=\"-4,4 -4,-112 66,-112 66,4 -4,4\" stroke=\"none\"/>\n",
"<!-- A -->\n",
"<g class=\"node\" id=\"node1\"><title>A</title>\n",
"<polygon fill=\"blue\" points=\"62,-108 0,-108 0,-72 62,-72 62,-108\" stroke=\"black\"/>\n",
"<text font-family=\"Times,serif\" font-size=\"14.00\" text-anchor=\"middle\" x=\"31\" y=\"-86.3\">A Label</text>\n",
"</g>\n",
"<!-- B -->\n",
"<g class=\"node\" id=\"node2\"><title>B</title>\n",
"<ellipse cx=\"31\" cy=\"-18\" fill=\"none\" rx=\"27\" ry=\"18\" stroke=\"black\"/>\n",
"<text font-family=\"Times,serif\" font-size=\"14.00\" text-anchor=\"middle\" x=\"31\" y=\"-14.3\">B</text>\n",
"</g>\n",
"<!-- A&#45;&gt;B -->\n",
"<g class=\"edge\" id=\"edge1\"><title>A-&gt;B</title>\n",
"<path d=\"M31,-71.6966C31,-63.9827 31,-54.7125 31,-46.1124\" fill=\"none\" stroke=\"black\"/>\n",
"<polygon fill=\"black\" points=\"34.5001,-46.1043 31,-36.1043 27.5001,-46.1044 34.5001,-46.1043\" stroke=\"black\"/>\n",
"</g>\n",
"</g>\n",
"</svg>"
],
"text/plain": [
"<IPython.core.display.SVG object>"
]
},
"execution_count": 4,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"SVG(g.create_svg())"
]
},
{
"cell_type": "code",
"execution_count": 9,
"metadata": {
"collapsed": false
},
"outputs": [],
"source": [
"g = pd.Dot(graph_type='digraph')\n",
"\n",
"c1 = pd.Cluster('c1')\n",
"c1.add_node(pd.Node('A'))\n",
"c1.add_node(pd.Node('B'))\n",
"c1.add_edge(pd.Edge('A', 'B'))\n",
"g.add_subgraph(c1)\n",
"\n",
"c2 = pd.Cluster('c2')\n",
"c2.add_node(pd.Node('C'))\n",
"c2.add_node(pd.Node('D'))\n",
"c2.add_edge(pd.Edge('C', 'D'))\n",
"g.add_subgraph(c2)\n",
"\n",
"g.add_edge(pd.Edge('A', 'C'))"
]
},
{
"cell_type": "code",
"execution_count": 10,
"metadata": {
"collapsed": false
},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"digraph G {\n",
"\tgraph [bb=\"0,0,164,212\"];\n",
"\tnode [label=\"\\N\"];\n",
"\tsubgraph cluster_c1 {\n",
"\t\tgraph [bb=\"8,80,78,204\"];\n",
"\t\tA\t\t [height=0.5,\n",
"\t\t\tpos=\"43,178\",\n",
"\t\t\twidth=0.75];\n",
"\t\tB\t\t [height=0.5,\n",
"\t\t\tpos=\"43,106\",\n",
"\t\t\twidth=0.75];\n",
"\t\tA -> B\t\t [pos=\"e,43,124.1 43,159.7 43,151.98 43,142.71 43,134.11\"];\n",
"\t}\n",
"\tsubgraph cluster_c2 {\n",
"\t\tgraph [bb=\"86,8,156,132\"];\n",
"\t\tC\t\t [height=0.5,\n",
"\t\t\tpos=\"121,106\",\n",
"\t\t\twidth=0.75];\n",
"\t\tD\t\t [height=0.5,\n",
"\t\t\tpos=\"121,34\",\n",
"\t\t\twidth=0.75];\n",
"\t\tC -> D\t\t [pos=\"e,121,52.104 121,87.697 121,79.983 121,70.712 121,62.112\"];\n",
"\t}\n",
"\tA -> C\t [pos=\"e,105.62,120.8 58.41,163.17 69.734,153.01 85.309,139.03 98.089,127.56\"];\n",
"}\n",
"\n"
]
}
],
"source": [
"print(g.create_dot())"
]
},
{
"cell_type": "code",
"execution_count": 43,
"metadata": {
"collapsed": false
},
"outputs": [
{
"data": {
"text/plain": [
"True"
]
},
"execution_count": 43,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"g.write_dot('nested.dot')"
]
},
{
"cell_type": "code",
"execution_count": 7,
"metadata": {
"collapsed": false
},
"outputs": [
{
"data": {
"image/svg+xml": [
"<svg height=\"220pt\" viewBox=\"0.00 0.00 172.00 220.00\" width=\"172pt\" xmlns=\"http://www.w3.org/2000/svg\" xmlns:xlink=\"http://www.w3.org/1999/xlink\">\n",
"<g class=\"graph\" id=\"graph0\" transform=\"scale(1 1) rotate(0) translate(4 216)\">\n",
"<title>G</title>\n",
"<polygon fill=\"white\" points=\"-4,4 -4,-216 168,-216 168,4 -4,4\" stroke=\"none\"/>\n",
"<g class=\"cluster\" id=\"clust1\"><title>cluster_c1</title>\n",
"<polygon fill=\"none\" points=\"8,-80 8,-204 78,-204 78,-80 8,-80\" stroke=\"black\"/>\n",
"</g>\n",
"<g class=\"cluster\" id=\"clust2\"><title>cluster_c2</title>\n",
"<polygon fill=\"none\" points=\"86,-8 86,-132 156,-132 156,-8 86,-8\" stroke=\"black\"/>\n",
"</g>\n",
"<!-- A -->\n",
"<g class=\"node\" id=\"node1\"><title>A</title>\n",
"<ellipse cx=\"43\" cy=\"-178\" fill=\"none\" rx=\"27\" ry=\"18\" stroke=\"black\"/>\n",
"<text font-family=\"Times,serif\" font-size=\"14.00\" text-anchor=\"middle\" x=\"43\" y=\"-174.3\">A</text>\n",
"</g>\n",
"<!-- B -->\n",
"<g class=\"node\" id=\"node2\"><title>B</title>\n",
"<ellipse cx=\"43\" cy=\"-106\" fill=\"none\" rx=\"27\" ry=\"18\" stroke=\"black\"/>\n",
"<text font-family=\"Times,serif\" font-size=\"14.00\" text-anchor=\"middle\" x=\"43\" y=\"-102.3\">B</text>\n",
"</g>\n",
"<!-- A&#45;&gt;B -->\n",
"<g class=\"edge\" id=\"edge1\"><title>A-&gt;B</title>\n",
"<path d=\"M43,-159.697C43,-151.983 43,-142.712 43,-134.112\" fill=\"none\" stroke=\"black\"/>\n",
"<polygon fill=\"black\" points=\"46.5001,-134.104 43,-124.104 39.5001,-134.104 46.5001,-134.104\" stroke=\"black\"/>\n",
"</g>\n",
"<!-- C -->\n",
"<g class=\"node\" id=\"node3\"><title>C</title>\n",
"<ellipse cx=\"121\" cy=\"-106\" fill=\"none\" rx=\"27\" ry=\"18\" stroke=\"black\"/>\n",
"<text font-family=\"Times,serif\" font-size=\"14.00\" text-anchor=\"middle\" x=\"121\" y=\"-102.3\">C</text>\n",
"</g>\n",
"<!-- A&#45;&gt;C -->\n",
"<g class=\"edge\" id=\"edge3\"><title>A-&gt;C</title>\n",
"<path d=\"M58.4103,-163.17C69.7345,-153.008 85.309,-139.03 98.0887,-127.561\" fill=\"none\" stroke=\"black\"/>\n",
"<polygon fill=\"black\" points=\"100.517,-130.085 105.622,-120.801 95.8416,-124.875 100.517,-130.085\" stroke=\"black\"/>\n",
"</g>\n",
"<!-- D -->\n",
"<g class=\"node\" id=\"node4\"><title>D</title>\n",
"<ellipse cx=\"121\" cy=\"-34\" fill=\"none\" rx=\"27\" ry=\"18\" stroke=\"black\"/>\n",
"<text font-family=\"Times,serif\" font-size=\"14.00\" text-anchor=\"middle\" x=\"121\" y=\"-30.3\">D</text>\n",
"</g>\n",
"<!-- C&#45;&gt;D -->\n",
"<g class=\"edge\" id=\"edge2\"><title>C-&gt;D</title>\n",
"<path d=\"M121,-87.6966C121,-79.9827 121,-70.7125 121,-62.1124\" fill=\"none\" stroke=\"black\"/>\n",
"<polygon fill=\"black\" points=\"124.5,-62.1043 121,-52.1043 117.5,-62.1044 124.5,-62.1043\" stroke=\"black\"/>\n",
"</g>\n",
"</g>\n",
"</svg>"
],
"text/plain": [
"<IPython.core.display.SVG object>"
]
},
"execution_count": 7,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"SVG(g.create_svg())"
]
},
{
"cell_type": "code",
"execution_count": 40,
"metadata": {
"collapsed": true
},
"outputs": [],
"source": [
"g = pd.Dot(graph_type='digraph')\n",
"g.add_node(pd.Node('A', fillcolor='lightblue', style='filled', shape='box', label='A Label', foo='1'))\n",
"g.add_node(pd.Node('B', fillcolor='green', shape='ellipse'))\n",
"g.add_edge(pd.Edge('A', 'B', labels='A -> B'))"
]
},
{
"cell_type": "code",
"execution_count": 41,
"metadata": {
"collapsed": false
},
"outputs": [
{
"data": {
"image/svg+xml": [
"<svg height=\"116pt\" viewBox=\"0.00 0.00 70.00 116.00\" width=\"70pt\" xmlns=\"http://www.w3.org/2000/svg\" xmlns:xlink=\"http://www.w3.org/1999/xlink\">\n",
"<g class=\"graph\" id=\"graph0\" transform=\"scale(1 1) rotate(0) translate(4 112)\">\n",
"<title>G</title>\n",
"<polygon fill=\"white\" points=\"-4,4 -4,-112 66,-112 66,4 -4,4\" stroke=\"none\"/>\n",
"<!-- A -->\n",
"<g class=\"node\" id=\"node1\"><title>A</title>\n",
"<polygon fill=\"lightblue\" points=\"62,-108 0,-108 0,-72 62,-72 62,-108\" stroke=\"black\"/>\n",
"<text font-family=\"Times,serif\" font-size=\"14.00\" text-anchor=\"middle\" x=\"31\" y=\"-86.3\">A Label</text>\n",
"</g>\n",
"<!-- B -->\n",
"<g class=\"node\" id=\"node2\"><title>B</title>\n",
"<ellipse cx=\"31\" cy=\"-18\" fill=\"none\" rx=\"27\" ry=\"18\" stroke=\"black\"/>\n",
"<text font-family=\"Times,serif\" font-size=\"14.00\" text-anchor=\"middle\" x=\"31\" y=\"-14.3\">B</text>\n",
"</g>\n",
"<!-- A&#45;&gt;B -->\n",
"<g class=\"edge\" id=\"edge1\"><title>A-&gt;B</title>\n",
"<path d=\"M31,-71.6966C31,-63.9827 31,-54.7125 31,-46.1124\" fill=\"none\" stroke=\"black\"/>\n",
"<polygon fill=\"black\" points=\"34.5001,-46.1043 31,-36.1043 27.5001,-46.1044 34.5001,-46.1043\" stroke=\"black\"/>\n",
"</g>\n",
"</g>\n",
"</svg>"
],
"text/plain": [
"<IPython.core.display.SVG object>"
]
},
"execution_count": 41,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"SVG(g.create_svg())"
]
},
{
"cell_type": "code",
"execution_count": 42,
"metadata": {
"collapsed": false
},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"digraph G {\n",
"\tgraph [bb=\"0,0,62,108\"];\n",
"\tnode [label=\"\\N\"];\n",
"\tA\t [fillcolor=lightblue,\n",
"\t\tfoo=1,\n",
"\t\theight=0.5,\n",
"\t\tlabel=\"A Label\",\n",
"\t\tpos=\"31,90\",\n",
"\t\tshape=box,\n",
"\t\tstyle=filled,\n",
"\t\twidth=0.86111];\n",
"\tB\t [fillcolor=green,\n",
"\t\theight=0.5,\n",
"\t\tpos=\"31,18\",\n",
"\t\tshape=ellipse,\n",
"\t\twidth=0.75];\n",
"\tA -> B\t [labels=\"A -> B\",\n",
"\t\tpos=\"e,31,36.104 31,71.697 31,63.983 31,54.712 31,46.112\"];\n",
"}\n",
"\n"
]
}
],
"source": [
"print(g.create_dot())"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"collapsed": true
},
"outputs": [],
"source": []
}
],
"metadata": {
"kernelspec": {
"display_name": "Python 2",
"language": "python",
"name": "python2"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 2
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython2",
"version": "2.7.10"
}
},
"nbformat": 4,
"nbformat_minor": 0
}
theano/d3printing/formatting.py
浏览文件 @ aa62fad6
......@@ -157,7 +157,7 @@ class GraphFormatter(object):
apply_shape = 'ellipse'
var_shape = 'box'
for node_idx, node in enumerate(topo):
astr = self.apply_name(node, fct, topo, mode, profile)
astr, aprof = self.apply_name(node, fct, topo, mode, profile)
use_color = None
for opName, color in self.colorCodes.items():
......@@ -165,12 +165,12 @@ class GraphFormatter(object):
use_color = color
if use_color is None:
nw_node = pd.Node(astr, shape=apply_shape)
nw_node = pd.Node(astr, shape=apply_shape, profile=aprof)
elif self.high_contrast:
nw_node = pd.Node(astr, style='filled', fillcolor=use_color,
shape=apply_shape, type='colored')
shape=apply_shape, type='colored', profile=aprof)
else:
nw_node = pd.Node(astr, color=use_color, shape=apply_shape)
nw_node = pd.Node(astr, color=use_color, shape=apply_shape, profile=aprof)
g.add_node(nw_node)
if self.cond_highlight:
if node in middle:
......@@ -180,6 +180,10 @@ class GraphFormatter(object):
elif node in right:
c2.add_node(nw_node)
def make_node(*args, **kwargs):
t = {k:v for k,v in kwargs.items() if v is not None}
return pd.Node(*args, **t)
for id, var in enumerate(node.inputs):
varstr = self.var_name(var)
label = str(var.type)
......@@ -196,19 +200,19 @@ class GraphFormatter(object):
param['color'] = 'red'
if var.owner is None:
if self.high_contrast:
g.add_node(pd.Node(varstr,
g.add_node(make_node(varstr,
style='filled',
fillcolor=self.node_colors['input'],
shape=var_shape))
shape=var_shape, profile=aprof))
else:
g.add_node(pd.Node(varstr, color=self.node_colors['input'],
shape=var_shape))
g.add_node(make_node(varstr, color=self.node_colors['input'],
shape=var_shape, profile=aprof))
g.add_edge(pd.Edge(varstr, astr, label=label, **param))
elif var.name or not self.compact:
g.add_edge(pd.Edge(varstr, astr, label=label, **param))
else:
# no name, so we don't make a var ellipse
name = self.apply_name(var.owner, fct, topo, mode, profile)
name, prof = self.apply_name(var.owner, fct, topo, mode, profile)
g.add_edge(pd.Edge(name, astr,
label=label, **param))
......@@ -223,21 +227,21 @@ class GraphFormatter(object):
if out:
g.add_edge(pd.Edge(astr, varstr, label=label))
if self.high_contrast:
g.add_node(pd.Node(varstr, style='filled',
g.add_node(make_node(varstr, style='filled',
fillcolor=self.node_colors['output'],
shape=var_shape))
shape=var_shape, profile=aprof))
else:
g.add_node(pd.Node(varstr, color=self.node_colors['output'],
shape=var_shape))
g.add_node(make_node(varstr, color=self.node_colors['output'],
shape=var_shape, profile=aprof))
elif len(var.clients) == 0:
g.add_edge(pd.Edge(astr, varstr, label=label))
if self.high_contrast:
g.add_node(pd.Node(varstr, style='filled',
g.add_node(make_node(varstr, style='filled',
fillcolor=self.node_colors['unused'],
shape=var_shape))
shape=var_shape, profile=aprof))
else:
g.add_node(pd.Node(varstr, color=self.node_colors['unused'],
shape=var_shape))
g.add_node(make_node(varstr, color=self.node_colors['unused'],
shape=var_shape, profile=aprof))
elif var.name or not self.compact:
g.add_edge(pd.Edge(astr, varstr, label=label))
......@@ -296,12 +300,11 @@ class GraphFormatter(object):
return varstr
def apply_name(self, node, fct, topo, mode=None, profile=None):
if node in self.apply_name_cache:
return self.apply_name_cache[node]
prof_str = ''
prof = None
if mode:
time = mode.profile_stats[fct].apply_time.get(node, 0)
# second, % total time in profiler, %fct time in profiler
......@@ -313,7 +316,7 @@ class GraphFormatter(object):
pf = 0
else:
pf = time * 100 / mode.profile_stats[fct].fct_call_time
prof_str = ' (%.3fs,%.3f%%,%.3f%%)' % (time, pt, pf)
prof = [time, pt, pf]
elif profile:
time = profile.apply_time.get(node, 0)
# second, %fct time in profiler
......@@ -321,9 +324,9 @@ class GraphFormatter(object):
pf = 0
else:
pf = time * 100 / profile.fct_call_time
prof_str = ' (%.3fs,%.3f%%)' % (time, pf)
prof = [time, None, pf]
applystr = str(node.op).replace(':', '_')
applystr += prof_str
if (applystr in self.all_strings) or self.with_ids:
idx = ' id=' + str(topo.index(node))
if len(applystr) + len(idx) > self.max_label_size:
......@@ -340,7 +343,11 @@ class GraphFormatter(object):
applystr = (applystr[:self.max_label_size - 3 - len(suffix)] +
'...' +
suffix)
if prof is not None:
prof = str(prof)
else:
prof = ''
self.all_strings.add(applystr)
self.apply_name_cache[node] = applystr
return applystr
self.apply_name_cache[node] = (applystr, prof)
return (applystr, prof)
theano/d3printing/template.html
浏览文件 @ aa62fad6
<!DOCTYPE html>
<html>
<head>
......@@ -58,7 +59,7 @@
stroke: dodgerblue;
}
.tooltip {
.edgeTooltip {
position: absolute;
text-align: center;
vertical-align: middle;
......@@ -70,9 +71,22 @@
border-radius: 8px;
pointer-events: none;
}
.nodeTooltip {
position: absolute;
text-align: left;
vertical-align: middle;
min-width: 10px;
min-height: 10px;
padding: 5px;
background: lightsteelblue;
border: 1px solid black;
border-radius: 8px;
pointer-events: none;
}
</style>
<div>
<div id='menu'>
<input name="resetNodes"
type="button"
value="Reset nodes"
......@@ -85,7 +99,9 @@
<script type="text/javascript">
var path='%% DOT_FILE %%';
var isProfiled = false;
var colorProfile = false;
// Global attributes
var pad = 10;
d3.select('body').select('svg').remove();
......@@ -95,7 +111,11 @@
var pane = svg.append('g');
var edgeDiv = d3.select('body').append('div')
.attr('class', 'tooltip')
.attr('class', 'edgeTooltip')
.style('opacity', 0.0);
var nodeDiv = d3.select('body').append('div')
.attr('class', 'nodeTooltip')
.style('opacity', 0.0);
// Definition head of edges
......@@ -113,6 +133,12 @@
.append("path")
.attr("d", "M0,0 L4,2 L0,4 Z")
.attr('fill', function(d) { return d.color;});
function toggleColors() {
colorProfile = !colorProfile;
updateNodes();
updateGraph();
}
function textSize(text, attr) {
var t = svg.append('text').text(text);
......@@ -128,8 +154,99 @@
function exists(x) {
return typeof(x) != 'undefined';
}
function replaceAll(str, find, replace) {
return str.replace(new RegExp(find, 'g'), replace);
}
function parseProfile(profile) {
if (typeof(profile) == 'undefined') {
return;
}
profile = profile.replace('[', '');
profile = profile.replace(']', '');
profile = replaceAll(profile, ' ', '');
profile = profile.split(',');
if (profile.length < 2) {
return [];
}
profile = profile.map(function(x) { return parseFloat(x); });
return profile;
}
function profileColor(per) {
var colors = ["#fff5f0","#fee0d2","#fcbba1","#fc9272","#fb6a4a","#ef3b2c","#cb181d","#a50f15","#67000d"];
var s = d3.scale.linear()
.domain([0, 100])
.range([0, colors.length - 1]);
return colors[Math.round(s(per))];
}
function fillColor(d) {
if (colorProfile && typeof(d.value.profile) != 'undefined') {
return profileColor(d.value.profile[2]);
} else {
return typeof(d.value.fillcolor) == 'undefined' ? 'white' : d.value.fillcolor;
}
}
function formatTime(sec) {
var s;
if (sec < 0.1) {
s = (sec * 1000).toFixed(1) + 'ms';
} else {
s = sec.toFixed(1) + 's';
}
return s;
}
function nodeDetails(node) {
var s = '<b>' + node.value.label + '</b>';
var p = node.value.profile;
if (!isNaN(p[0])) {
s += '<br>Total time: ' + formatTime(p[0]);
}
if (!isNaN(p[1])) {
s += '<br>Total time: ' + p[1].toFixed(1) + '%';
}
if (!isNaN(p[2])) {
s += '<br>Profile time: ' + p[2].toFixed(1) + '%';
}
return s;
}
function updateNode(d, node) {
var shape;
if (d.value.shape == 'ellipse') {
node.selectAll('ellipse').remove();
shape = node.append('ellipse')
.attr('class', 'nodeEllipse')
.attr('cx', d.value.cx)
.attr('cy', d.value.cy)
.attr('rx', d.value.width * 0.6)
.attr('ry', d.value.height * 0.6);
} else {
node.selectAll('rect').remove();
shape = node.append('rect')
.attr('class', 'nodeRect')
.attr('width', d.value.width)
.attr('height', d.value.height);
}
shape.attr('fill', fillColor(d));
node.selectAll('text').remove();
var text = node.append('text')
.attr('class', 'nodeText')
.attr('x', pad)
.attr('dy', function(d) {return d.value.height - pad - 5;})
.text(function(d) {return d.value.label;});
}
function updateNodes() {
nodes.each(function(d) {var node = d3.select(this); updateNode(d, node);});
}
var dotGraph;
var graph = {};
......@@ -146,7 +263,7 @@
var posMax = [0, 0];
for (var nodeId in dotGraph._nodes) {
var node = dotGraph._nodes[nodeId];
node.value.label = node.id;
node.value.label = node.id;
node.value.pos = node.value.pos.split(',').map(function(d) {return parseInt(d);});
node.value.width = parseInt(node.value.width);
node.value.height = parseInt(node.value.height);
......@@ -173,12 +290,24 @@
node.value.height = size.height + 2 * pad;
node.value.cx = node.value.width / 2;
node.value.cy = node.value.height / 2;
node.value.profile = parseProfile(node.value.profile);
if (typeof(node.value.profile) != 'undefined') {
isProfiled = true;
}
node.fixed = true;
nodes.push(node);
dotGraph._nodes[nodeId] = node;
}
if (isProfiled) {
d3.select('body').select('#menu').append('input')
.attr('name', 'tColors')
.attr('type', 'button')
.attr('value', 'Toggle profile colors')
.attr('onclick', "toggleColors()");
}
// Parse edges
for (edgeId in dotGraph._edges) {
var edge = dotGraph._edges[edgeId];
......@@ -241,11 +370,9 @@
});
// Add nodes
nodes = pane.append('g').attr('id', 'nodes').selectAll('g').data(graph['nodes']).enter().append('g');
function fillColor(f) {
return typeof(f) == 'undefined' ? 'white' : f;
}
function setNodeSize(node) {
var size = textSize(node.value.label, {'class': 'nodeText'});
node.value.width = size.width + 2 * pad;
......@@ -254,44 +381,25 @@
node.value.cy = node.value.height / 2;
}
function updateNode(d, node) {
var shape;
if (d.value.shape == 'ellipse') {
node.selectAll('ellipse').remove();
shape = node.append('ellipse')
.attr('class', 'nodeEllipse')
.attr('cx', d.value.cx)
.attr('cy', d.value.cy)
.attr('rx', d.value.width * 0.6)
.attr('ry', d.value.height * 0.6);
} else {
node.selectAll('rect').remove();
shape = node.append('rect')
.attr('class', 'nodeRect')
.attr('width', d.value.width)
.attr('height', d.value.height);
}
shape.attr('fill', fillColor(d.value.fillcolor));
node.selectAll('text').remove();
var text = node.append('text')
.attr('class', 'nodeText')
.attr('x', pad)
.attr('dy', function(d) {return d.value.height - pad - 5;})
.text(function(d) {return d.value.label;})
.on('dblclick', releaseNode);
updateNodes();
function hideNodeDiv() {
nodeDiv.transition()
.duration(200)
.style('opacity', 0);
}
nodes.each(function(d) {var node = d3.select(this); updateNode(d, node);});
// TODO: activate again without interfering with click event
//nodes.on('dblclick', releaseNode);
nodes.on('click', function(d) {
var editNode = false;
nodes.on('dblclick', function(d) {
var pos = this.getBBox();
var node = d3.select(this);
if (d3.event.defaultPrevented) return;
editNode = true;
hideNodeDiv();
var form = node.append('foreignObject')
.attr('x', pos.x)
.attr('y', pos.y)
......@@ -308,6 +416,7 @@
setNodeSize(d);
updateNode(d, node);
form.remove(); // TODO: check this
editNode = false;
})
.on('keypress', function() {
if (!d3.event) {
......@@ -325,12 +434,17 @@
d.value.label = input.node().value;
setNodeSize(d);
updateNode(d, node);
form.remove(); // TODO: check thi
form.remove(); // TODO: check this
editNode = false;
}
});
});
nodes.on('mouseover', function(node) {
if (editNode || typeof(node.value.profile) == 'undefined') {
return;
}
edges.each(function (d, i) {
var edge = d3.select(this);
if (d.source == node || d.target == node) {
......@@ -339,8 +453,16 @@
.style('opacity', 1.0);
}
});
nodeDiv.transition()
.duration(200)
.style('opacity', .9);
nodeDiv
.html(nodeDetails(node))
.style('left', (d3.event.pageX) + 30 + 'px')
.style('top', (d3.event.pageY - 28) + 'px');
});
nodes.on('mouseout', function(node) {
edges.each(function (d, i) {
var edge = d3.select(this);
......@@ -350,6 +472,11 @@
.style('opacity', 0.4);
}
});
hideNodeDiv();
});
nodes.on('contextmenu', function(d) {
releaseNode(d);
});
......
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