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testgroup
pytensor
Commits
a3dc0a72
提交
a3dc0a72
authored
6月 09, 2022
作者:
Ricardo
提交者:
Ricardo Vieira
6月 13, 2022
浏览文件
操作
浏览文件
下载
电子邮件补丁
差异文件
Broadcast input matrices in Gemm
上级
89353bd2
隐藏空白字符变更
内嵌
并排
正在显示
2 个修改的文件
包含
187 行增加
和
63 行删除
+187
-63
blas.py
aesara/tensor/blas.py
+116
-63
test_blas.py
tests/tensor/test_blas.py
+71
-0
没有找到文件。
aesara/tensor/blas.py
浏览文件 @
a3dc0a72
...
@@ -138,7 +138,6 @@ try:
...
@@ -138,7 +138,6 @@ try:
except
ImportError
:
except
ImportError
:
pass
pass
from
functools
import
reduce
from
typing
import
Tuple
,
Union
from
typing
import
Tuple
,
Union
import
aesara.scalar
import
aesara.scalar
...
@@ -630,8 +629,10 @@ class GemmRelated(COp):
...
@@ -630,8 +629,10 @@ class GemmRelated(COp):
{PyErr_SetString(PyExc_NotImplementedError, "type(b) is not double or float");
%(fail)
s;}
{PyErr_SetString(PyExc_NotImplementedError, "type(b) is not double or float");
%(fail)
s;}
"""
"""
# broadcast_xy = None
check_dims
=
"""
check_dims
=
"""
if (Nx[0] != Nz[0])
if (Nx[0] !=
1 && Nz[0] != 1 && Nx[0] !=
Nz[0])
{
{
PyErr_Format(PyExc_ValueError,
PyErr_Format(PyExc_ValueError,
"Shape mismatch: x has
%%
ld rows but z has
%%
ld rows",
"Shape mismatch: x has
%%
ld rows but z has
%%
ld rows",
...
@@ -645,7 +646,7 @@ class GemmRelated(COp):
...
@@ -645,7 +646,7 @@ class GemmRelated(COp):
(long int)Nx[1], (long int)Nx[0], (long int)Ny[0], (long int)Ny[1]);
(long int)Nx[1], (long int)Nx[0], (long int)Ny[0], (long int)Ny[1]);
%(fail)
s;
%(fail)
s;
}
}
if (Ny[1] != Nz[1])
if (Ny[1] !=
1 && Nz[1]!= 1 && Ny[1] !=
Nz[1])
{
{
PyErr_Format(PyExc_ValueError,
PyErr_Format(PyExc_ValueError,
"Shape mismatch: y has
%%
ld cols but z has
%%
ld cols",
"Shape mismatch: y has
%%
ld cols but z has
%%
ld cols",
...
@@ -822,14 +823,14 @@ class GemmRelated(COp):
...
@@ -822,14 +823,14 @@ class GemmRelated(COp):
else
:
else
:
setup_z_Nz_Sz
=
self
.
setup_z_Nz_Sz
setup_z_Nz_Sz
=
self
.
setup_z_Nz_Sz
return
reduce
(
return
""
.
join
(
str
.
__add__
,
(
(
self
.
declare_NS
,
self
.
declare_NS
,
self
.
check_xyz_rank2
,
self
.
check_xyz_rank2
,
setup_z_Nz_Sz
,
setup_z_Nz_Sz
,
self
.
check_xyz_double_or_float
,
self
.
check_xyz_double_or_float
,
self
.
check_ab_double_or_float
,
self
.
check_ab_double_or_float
,
self
.
broadcast_xy
,
self
.
check_dims
,
self
.
check_dims
,
self
.
check_strides
,
self
.
check_strides
,
self
.
encode_strides_in_unit
,
self
.
encode_strides_in_unit
,
...
@@ -842,8 +843,7 @@ class GemmRelated(COp):
...
@@ -842,8 +843,7 @@ class GemmRelated(COp):
self
.
case_double_ab_constants
,
self
.
case_double_ab_constants
,
self
.
case_double_gemm
,
self
.
case_double_gemm
,
self
.
end_switch_typenum
,
self
.
end_switch_typenum
,
),
)
""
,
)
)
def
build_gemm_version
(
self
):
def
build_gemm_version
(
self
):
...
@@ -973,6 +973,11 @@ class Gemm(GemmRelated):
...
@@ -973,6 +973,11 @@ class Gemm(GemmRelated):
z
.
itemset
(
z
*
a
+
b
*
np
.
dot
(
x
,
y
))
z
.
itemset
(
z
*
a
+
b
*
np
.
dot
(
x
,
y
))
zout
[
0
]
=
z
zout
[
0
]
=
z
else
:
else
:
# Broadcast Z if needed
if
(
x
.
shape
[
0
]
>
z
.
shape
[
0
])
or
(
y
.
shape
[
1
]
>
z
.
shape
[
1
]):
z
=
np
.
broadcast_to
(
z
,
(
max
(
x
.
shape
[
0
],
z
.
shape
[
0
]),
max
(
y
.
shape
[
1
],
z
.
shape
[
1
]))
)
.
copy
()
if
b
==
0.0
:
if
b
==
0.0
:
if
a
==
1.0
:
if
a
==
1.0
:
z
[:]
=
np
.
dot
(
x
,
y
)
z
[:]
=
np
.
dot
(
x
,
y
)
...
@@ -993,88 +998,135 @@ class Gemm(GemmRelated):
...
@@ -993,88 +998,135 @@ class Gemm(GemmRelated):
zout
[
0
]
=
z
zout
[
0
]
=
z
def
infer_shape
(
self
,
fgraph
,
node
,
input_shapes
):
def
infer_shape
(
self
,
fgraph
,
node
,
input_shapes
):
return
[
input_shapes
[
0
]]
z_shape
,
_
,
x_shape
,
y_shape
,
_
=
input_shapes
return
[
(
aesara
.
scalar
.
scalar_maximum
(
z_shape
[
0
],
x_shape
[
0
]),
aesara
.
scalar
.
scalar_maximum
(
z_shape
[
1
],
y_shape
[
1
]),
)
]
setup_z_Nz_Sz_inplace
=
"""
setup_z_Nz_Sz_inplace
=
"""
if (
%(_zout)
s !=
%(_z)
s)
// Needs broadcasting
{
if (PyArray_DIMS(
%(_z)
s)[0] < Nx[0] || PyArray_DIMS(
%(_z)
s)[1] < Ny[1]){
if (
%(_zout)
s)
npy_intp dims[2];
dims[0] = (PyArray_DIMS(
%(_z)
s)[0] >= Nx[0]) ? PyArray_DIMS(
%(_z)
s)[0] : Nx[0];
dims[1] = (PyArray_DIMS(
%(_z)
s)[1] >= Ny[1]) ? PyArray_DIMS(
%(_z)
s)[1] : Ny[1];
// Check if we need to allocate new array
if((NULL ==
%(_zout)
s)
|| (PyArray_DIMS(
%(_zout)
s)[0] != dims[0])
|| (PyArray_DIMS(
%(_zout)
s)[1] != dims[1]))
{
{
Py_DECREF(
%(_zout)
s);
// fprintf(stderr, "Gemm Allocating z output array with shape (
%%
i
%%
i)
\\
n", dims[0], dims[1]);
Py_XDECREF(
%(_zout)
s);
%(_zout)
s = (PyArrayObject*)PyArray_SimpleNew(2, dims, PyArray_TYPE(
%(_z)
s));
}
// fprintf(stderr, "Gemm Broadcasting Z into shape (
%%
i
%%
i)
\\
n", dims[0], dims[1]);
if(PyArray_CopyInto(
%(_zout)
s,
%(_z)
s) == -1)
{
%(fail)
s;
}
} else {
if (
%(_zout)
s !=
%(_z)
s)
{
Py_XDECREF(
%(_zout)
s);
%(_zout)
s =
%(_z)
s;
Py_INCREF(
%(_zout)
s);
}
}
%(_zout)
s =
%(_z)
s;
Py_INCREF(
%(_zout)
s);
}
}
Nz = PyArray_DIMS(
%(_z)
s);
Sz = PyArray_STRIDES(
%(_z)
s);
Nz = PyArray_DIMS(
%(_zout)
s);
Sz = PyArray_STRIDES(
%(_zout)
s);
"""
"""
setup_z_Nz_Sz_outplace
=
"""
setup_z_Nz_Sz_outplace
=
"""
npy_intp dims[2];
dims[0] = (PyArray_DIMS(
%(_z)
s)[0] >= Nx[0]) ? PyArray_DIMS(
%(_z)
s)[0] : Nx[0];
dims[1] = (PyArray_DIMS(
%(_z)
s)[1] >= Ny[1]) ? PyArray_DIMS(
%(_z)
s)[1] : Ny[1];
// Check if we need to allocate new array
if ((NULL ==
%(_zout)
s)
if ((NULL ==
%(_zout)
s)
|| (PyArray_DIMS(
%(_zout)
s)[0] != PyArray_DIMS(
%(_z)
s)[0])
|| (PyArray_DIMS(
%(_zout)
s)[0] != dims[0])
|| (PyArray_DIMS(
%(_zout)
s)[1] != PyArray_DIMS(
%(_z)
s)[1])
|| (PyArray_DIMS(
%(_zout)
s)[1] != dims[1]))
|| (PyArray_STRIDES(
%(_zout)
s)[0] <= 0)
|| (PyArray_STRIDES(
%(_zout)
s)[1] <= 0)
|| (PyArray_STRIDES(
%(_zout)
s)[0] MOD type_size)
|| (PyArray_STRIDES(
%(_zout)
s)[1] MOD type_size)
|| ((PyArray_STRIDES(
%(_zout)
s)[0] != type_size)
&& (PyArray_STRIDES(
%(_zout)
s)[1] != type_size)))
{
{
Py_XDECREF(
%(_zout)
s);
Py_XDECREF(
%(_zout)
s);
npy_intp dims[2];
%(_zout)
s = (PyArrayObject*)PyArray_SimpleNew(2, dims, PyArray_TYPE(
%(_z)
s));
dims[0] = PyArray_DIMS(
%(_z)
s)[0];
// fprintf(stderr, "Gemm Allocating z output array with shape (
%%
i
%%
i)
\\
n", dims[0], dims[1]);
dims[1] = PyArray_DIMS(
%(_z)
s)[1];
%(_zout)
s = (PyArrayObject*)PyArray_SimpleNew(2, dims,
PyArray_TYPE(
%(_z)
s));
//fprintf(stderr, "Gemm Allocating
%%
i
%%
i
\\
n", dims[0], dims[1]);
if(!
%(_zout)
s) {
if(!
%(_zout)
s) {
PyErr_SetString(PyExc_MemoryError,
PyErr_SetString(PyExc_MemoryError,
"failed to alloc gemm_no_inplace output");
"failed to alloc gemm_no_inplace output");
%(fail)
s
%(fail)
s
}
}
}
}
// fprintf(stderr, "Gemm Broadcasting Z into shape (
%%
i
%%
i)
\\
n", dims[0], dims[1]);
if(PyArray_CopyInto(
%(_zout)
s,
%(_z)
s) == -1)
{
%(fail)
s
}
Nz = PyArray_DIMS(
%(_zout)
s);
Nz = PyArray_DIMS(
%(_zout)
s);
Sz = PyArray_STRIDES(
%(_zout)
s);
Sz = PyArray_STRIDES(
%(_zout)
s);
"""
if (PyArray_DESCR(
%(_zout)
s)->type_num == NPY_FLOAT)
broadcast_xy
=
"""
// Broadcast X if needed
if (Nz[0] > Nx[0])
{
{
float * zoutdata = (float*)PyArray_DATA(
%(_zout)
s);
npy_intp dims[2];
int zoi = Sz[0] / sizeof(float);
dims[0] = Nz[0];
int zoj = Sz[1] / sizeof(float);
dims[1] = Nx[1];
const float * zdata = (float*)PyArray_DATA(
%(_z)
s);
// fprintf(stderr, "Gemm Broadcasting X into shape (
%%
i
%%
i)
\\
n", dims[0], dims[1]);
int zi = PyArray_STRIDES(
%(_z)
s)[0]/sizeof(float);
PyArrayObject *x_new = (PyArrayObject*)PyArray_SimpleNew(2, dims, PyArray_TYPE(
%(_x)
s));
int zj = PyArray_STRIDES(
%(_z)
s)[1]/sizeof(float);
if(!x_new) {
for (int i = 0; i < Nz[0]; ++i)
PyErr_SetString(PyExc_MemoryError,
"failed to alloc gemm_inplace input");
%(fail)
s
}
if(PyArray_MoveInto(x_new,
%(_x)
s) == -1)
{
{
for (int j = 0; j < Nz[1]; ++j)
%(fail)
s
{
zoutdata[zoi*i + zoj*j] = zdata[zi*i + zj*j];
}
}
}
Py_DECREF(
%(_x)
s);
%(_x)
s = x_new;
Nx = PyArray_DIMS(
%(_x)
s);
Sx = PyArray_STRIDES(
%(_x)
s);
}
}
else if (PyArray_DESCR(
%(_zout)
s)->type_num == NPY_DOUBLE)
// Broadcast Y if needed
if (Nz[1] > Ny[1])
{
{
double * zoutdata = (double*) PyArray_DATA(
%(_zout)
s);
npy_intp dims[2];
int zoi = Sz[0] / sizeof(double);
dims[0] = Ny[0];
int zoj = Sz[1] / sizeof(double);
dims[1] = Nz[1];
const double * zdata = (double*)PyArray_DATA(
%(_z)
s);
// fprintf(stderr, "Gemm Broadcasting Y into shape (
%%
i
%%
i)
\\
n", dims[0], dims[1]);
int zi = PyArray_STRIDES(
%(_z)
s)[0]/sizeof(double);
PyArrayObject *y_new = (PyArrayObject*)PyArray_SimpleNew(2, dims, PyArray_TYPE(
%(_x)
s));
int zj = PyArray_STRIDES(
%(_z)
s)[1]/sizeof(double);
if(!y_new) {
for (int i = 0; i < Nz[0]; ++i)
PyErr_SetString(PyExc_MemoryError,
"failed to alloc gemm_inplace input");
%(fail)
s
}
if(PyArray_MoveInto(y_new,
%(_y)
s) == -1)
{
{
for (int j = 0; j < Nz[1]; ++j)
%(fail)
s
{
zoutdata[zoi*i + zoj*j] = zdata[zi*i + zj*j];
}
}
}
Py_DECREF(
%(_y)
s);
%(_y)
s = y_new;
Ny = PyArray_DIMS(
%(_y)
s);
Sy = PyArray_STRIDES(
%(_y)
s);
}
}
else
{
"""
PyErr_SetString(PyExc_AssertionError,
"neither float nor double dtype");
%(fail)
s
}
"""
case_float_ab_constants
=
"""
case_float_ab_constants
=
"""
#define REAL float
#define REAL float
...
@@ -1108,7 +1160,7 @@ class Gemm(GemmRelated):
...
@@ -1108,7 +1160,7 @@ class Gemm(GemmRelated):
def
c_code_cache_version
(
self
):
def
c_code_cache_version
(
self
):
gv
=
self
.
build_gemm_version
()
gv
=
self
.
build_gemm_version
()
if
gv
:
if
gv
:
return
(
6
,)
+
gv
return
(
7
,)
+
gv
else
:
else
:
return
gv
return
gv
...
@@ -1182,7 +1234,6 @@ def _beta_L_plus_alpha_M(fgraph, beta, L, alpha, M, recurse_flip=True):
...
@@ -1182,7 +1234,6 @@ def _beta_L_plus_alpha_M(fgraph, beta, L, alpha, M, recurse_flip=True):
if
M
.
owner
and
M
.
owner
.
op
==
_dot22
:
if
M
.
owner
and
M
.
owner
.
op
==
_dot22
:
Ml
,
Mr
=
M
.
owner
.
inputs
Ml
,
Mr
=
M
.
owner
.
inputs
rval
=
[
gemm_no_inplace
(
L
,
alpha
,
Ml
,
Mr
,
beta
)]
rval
=
[
gemm_no_inplace
(
L
,
alpha
,
Ml
,
Mr
,
beta
)]
# print 'GEMM 0', rval, beta, L, alpha, M
return
rval
,
M
return
rval
,
M
# it also might be the case that there is a dimshuffle between the +
# it also might be the case that there is a dimshuffle between the +
...
@@ -1650,6 +1701,7 @@ class Dot22(GemmRelated):
...
@@ -1650,6 +1701,7 @@ class Dot22(GemmRelated):
Sz = PyArray_STRIDES(
%(_zout)
s);
Sz = PyArray_STRIDES(
%(_zout)
s);
"""
"""
broadcast_xy
=
""
check_ab_double_or_float
=
""
check_ab_double_or_float
=
""
case_float_ab_constants
=
"""
case_float_ab_constants
=
"""
float a = 1.0;
float a = 1.0;
...
@@ -1933,6 +1985,7 @@ class Dot22Scalar(GemmRelated):
...
@@ -1933,6 +1985,7 @@ class Dot22Scalar(GemmRelated):
return
[[
input_shapes
[
0
][
0
],
input_shapes
[
1
][
1
]]]
return
[[
input_shapes
[
0
][
0
],
input_shapes
[
1
][
1
]]]
setup_z_Nz_Sz
=
Dot22
.
setup_z_Nz_Sz
setup_z_Nz_Sz
=
Dot22
.
setup_z_Nz_Sz
broadcast_xy
=
""
check_ab_double_or_float
=
"""
check_ab_double_or_float
=
"""
if ((PyArray_DESCR(
%(_a)
s)->type_num != NPY_DOUBLE)
if ((PyArray_DESCR(
%(_a)
s)->type_num != NPY_DOUBLE)
...
...
tests/tensor/test_blas.py
浏览文件 @
a3dc0a72
from
copy
import
copy
from
copy
import
copy
from
itertools
import
product
from
itertools
import
product
from
random
import
shuffle
import
numpy
as
np
import
numpy
as
np
import
pytest
import
pytest
...
@@ -67,6 +68,7 @@ from aesara.tensor.type import (
...
@@ -67,6 +68,7 @@ from aesara.tensor.type import (
matrix
,
matrix
,
row
,
row
,
scalar
,
scalar
,
scalars
,
tensor
,
tensor
,
tensor3
,
tensor3
,
tensor4
,
tensor4
,
...
@@ -1042,6 +1044,41 @@ def test_inplace1():
...
@@ -1042,6 +1044,41 @@ def test_inplace1():
assert
[
n
.
op
for
n
in
f
.
maker
.
fgraph
.
apply_nodes
]
==
[
gemm_no_inplace
]
assert
[
n
.
op
for
n
in
f
.
maker
.
fgraph
.
apply_nodes
]
==
[
gemm_no_inplace
]
@pytest.mark.parametrize
(
"linker"
,
(
"py"
,
"cvm"
))
@pytest.mark.parametrize
(
"inplace"
,
(
False
,
True
))
def
test_gemm_broadcasting
(
inplace
,
linker
):
a
,
b
=
scalars
(
"a"
,
"b"
)
z
,
x
,
y
=
matrices
(
"z"
,
"x"
,
"y"
)
mode
=
Mode
(
linker
=
linker
)
if
inplace
:
out
=
gemm_inplace
(
z
,
a
,
x
,
y
,
b
)
f
=
aesara
.
function
([
z
,
x
,
y
,
a
,
b
],
out
,
accept_inplace
=
True
,
mode
=
mode
)
assert
[
node
.
op
for
node
in
f
.
maker
.
fgraph
.
toposort
()]
==
[
gemm_inplace
]
else
:
out
=
gemm_no_inplace
(
z
,
a
,
x
,
y
,
b
)
f
=
aesara
.
function
([
z
,
x
,
y
,
a
,
b
],
out
,
mode
=
mode
)
assert
[
node
.
op
for
node
in
f
.
maker
.
fgraph
.
toposort
()]
==
[
gemm_no_inplace
]
shapes_z
=
[(
5
,
3
),
(
1
,
3
),
(
5
,
1
),
(
1
,
1
)]
shapes_x
=
[(
5
,
4
),
(
1
,
4
)]
shapes_y
=
[(
4
,
3
),
(
4
,
1
)]
rng
=
np
.
random
.
default_rng
()
shuffle
(
shapes_z
)
shuffle
(
shapes_x
)
shuffle
(
shapes_y
)
for
shape_z
,
shape_x
,
shape_y
in
product
(
shapes_z
,
shapes_x
,
shapes_y
):
z_v
=
rng
.
random
(
size
=
shape_z
)
.
astype
(
config
.
floatX
)
x_v
=
rng
.
random
(
size
=
shape_x
)
.
astype
(
config
.
floatX
)
y_v
=
rng
.
random
(
size
=
shape_y
)
.
astype
(
config
.
floatX
)
# We have to copy for the inplace case
z_v_np
=
z_v
.
copy
()
np
.
testing
.
assert_allclose
(
f
(
z_v
,
x_v
,
y_v
,
1
,
1
),
z_v_np
+
np
.
dot
(
x_v
,
y_v
),
atol
=
2e-6
)
def
test_dot22
():
def
test_dot22
():
for
dtype1
in
[
"float32"
,
"float64"
,
"complex64"
,
"complex128"
]:
for
dtype1
in
[
"float32"
,
"float64"
,
"complex64"
,
"complex128"
]:
a
=
matrix
(
dtype
=
dtype1
)
a
=
matrix
(
dtype
=
dtype1
)
...
@@ -2476,6 +2513,40 @@ class TestInferShape(unittest_tools.InferShapeTester):
...
@@ -2476,6 +2513,40 @@ class TestInferShape(unittest_tools.InferShapeTester):
Gemm
,
Gemm
,
)
)
def
test_gemm_broadcast
(
self
):
rng
=
np
.
random
.
default_rng
(
unittest_tools
.
fetch_seed
())
x
,
y
,
z
=
matrices
(
"xyz"
)
a
=
scalar
(
"a"
)
b
=
scalar
(
"b"
)
# Broadcast Z
self
.
_compile_and_check
(
[
x
,
y
,
a
,
z
,
b
],
[
gemm
(
z
,
a
,
x
,
y
,
b
)],
[
rng
.
random
((
2
,
3
))
.
astype
(
config
.
floatX
),
rng
.
random
((
3
,
4
))
.
astype
(
config
.
floatX
),
np
.
asarray
(
0.5
,
dtype
=
config
.
floatX
),
rng
.
random
((
1
,
4
))
.
astype
(
config
.
floatX
),
np
.
asarray
(
0.5
,
dtype
=
config
.
floatX
),
],
Gemm
,
)
# Broadcast dot(X, Y)
self
.
_compile_and_check
(
[
x
,
y
,
a
,
z
,
b
],
[
gemm
(
z
,
a
,
x
,
y
,
b
)],
[
rng
.
random
((
1
,
3
))
.
astype
(
config
.
floatX
),
rng
.
random
((
3
,
4
))
.
astype
(
config
.
floatX
),
np
.
asarray
(
0.5
,
dtype
=
config
.
floatX
),
rng
.
random
((
5
,
4
))
.
astype
(
config
.
floatX
),
np
.
asarray
(
1
,
dtype
=
config
.
floatX
),
],
Gemm
,
)
def
test_gemv
(
self
):
def
test_gemv
(
self
):
rng
=
np
.
random
.
default_rng
(
unittest_tools
.
fetch_seed
())
rng
=
np
.
random
.
default_rng
(
unittest_tools
.
fetch_seed
())
A
=
matrix
(
"A"
)
A
=
matrix
(
"A"
)
...
...
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