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testgroup
pytensor
Commits
a149f6c9
提交
a149f6c9
authored
3月 06, 2025
作者:
Ricardo Vieira
提交者:
Ricardo Vieira
3月 18, 2025
浏览文件
操作
浏览文件
下载
电子邮件补丁
差异文件
Enable new `assume_a` in Solve
上级
6e06f811
显示空白字符变更
内嵌
并排
正在显示
4 个修改的文件
包含
164 行增加
和
35 行删除
+164
-35
slinalg.py
pytensor/link/jax/dispatch/slinalg.py
+23
-5
slinalg.py
pytensor/link/numba/dispatch/slinalg.py
+9
-5
slinalg.py
pytensor/tensor/slinalg.py
+98
-23
test_slinalg.py
tests/tensor/test_slinalg.py
+34
-2
没有找到文件。
pytensor/link/jax/dispatch/slinalg.py
浏览文件 @
a149f6c9
import
warnings
import
jax
import
jax
from
pytensor.link.jax.dispatch.basic
import
jax_funcify
from
pytensor.link.jax.dispatch.basic
import
jax_funcify
...
@@ -39,13 +41,29 @@ def jax_funcify_Cholesky(op, **kwargs):
...
@@ -39,13 +41,29 @@ def jax_funcify_Cholesky(op, **kwargs):
@jax_funcify.register
(
Solve
)
@jax_funcify.register
(
Solve
)
def
jax_funcify_Solve
(
op
,
**
kwargs
):
def
jax_funcify_Solve
(
op
,
**
kwargs
):
if
op
.
assume_a
!=
"gen"
and
op
.
lower
:
assume_a
=
op
.
assume_a
lower
=
True
lower
=
op
.
lower
if
assume_a
==
"tridiagonal"
:
# jax.scipy.solve does not yet support tridiagonal matrices
# But there's a jax.lax.linalg.tridiaonal_solve we can use instead.
def
solve
(
a
,
b
):
dl
=
jax
.
numpy
.
diagonal
(
a
,
offset
=-
1
,
axis1
=-
2
,
axis2
=-
1
)
d
=
jax
.
numpy
.
diagonal
(
a
,
offset
=
0
,
axis1
=-
2
,
axis2
=-
1
)
du
=
jax
.
numpy
.
diagonal
(
a
,
offset
=
1
,
axis1
=-
2
,
axis2
=-
1
)
return
jax
.
lax
.
linalg
.
tridiagonal_solve
(
dl
,
d
,
du
,
b
,
lower
=
lower
)
else
:
else
:
lower
=
False
if
assume_a
not
in
(
"gen"
,
"sym"
,
"her"
,
"pos"
):
warnings
.
warn
(
f
"JAX solve does not support assume_a={op.assume_a}. Defaulting to assume_a='gen'.
\n
"
f
"If appropriate, you may want to set assume_a to one of 'sym', 'pos', 'her' or 'tridiagonal' to improve performance."
,
UserWarning
,
)
assume_a
=
"gen"
def
solve
(
a
,
b
,
lower
=
lower
):
def
solve
(
a
,
b
):
return
jax
.
scipy
.
linalg
.
solve
(
a
,
b
,
lower
=
lower
)
return
jax
.
scipy
.
linalg
.
solve
(
a
,
b
,
lower
=
lower
,
assume_a
=
assume_a
)
return
solve
return
solve
...
...
pytensor/link/numba/dispatch/slinalg.py
浏览文件 @
a149f6c9
import
warnings
from
collections.abc
import
Callable
from
collections.abc
import
Callable
import
numba
import
numba
...
@@ -1071,14 +1072,17 @@ def numba_funcify_Solve(op, node, **kwargs):
...
@@ -1071,14 +1072,17 @@ def numba_funcify_Solve(op, node, **kwargs):
elif
assume_a
==
"sym"
:
elif
assume_a
==
"sym"
:
solve_fn
=
_solve_symmetric
solve_fn
=
_solve_symmetric
elif
assume_a
==
"her"
:
elif
assume_a
==
"her"
:
raise
NotImplementedError
(
# We already ruled out complex inputs
'Use assume_a = "sym" for symmetric real matrices. If you need compelx support, '
solve_fn
=
_solve_symmetric
"please open an issue on github."
)
elif
assume_a
==
"pos"
:
elif
assume_a
==
"pos"
:
solve_fn
=
_solve_psd
solve_fn
=
_solve_psd
else
:
else
:
raise
NotImplementedError
(
f
"Assumption {assume_a} not supported in Numba mode"
)
warnings
.
warn
(
f
"Numba assume_a={assume_a} not implemented. Falling back to general solve.
\n
"
f
"If appropriate, you may want to set assume_a to one of 'sym', 'pos', or 'her' to improve performance."
,
UserWarning
,
)
solve_fn
=
_solve_gen
@numba_basic.numba_njit
(
inline
=
"always"
)
@numba_basic.numba_njit
(
inline
=
"always"
)
def
solve
(
a
,
b
):
def
solve
(
a
,
b
):
...
...
pytensor/tensor/slinalg.py
浏览文件 @
a149f6c9
...
@@ -15,6 +15,7 @@ from pytensor.graph.op import Op
...
@@ -15,6 +15,7 @@ from pytensor.graph.op import Op
from
pytensor.tensor
import
TensorLike
,
as_tensor_variable
from
pytensor.tensor
import
TensorLike
,
as_tensor_variable
from
pytensor.tensor
import
basic
as
ptb
from
pytensor.tensor
import
basic
as
ptb
from
pytensor.tensor
import
math
as
ptm
from
pytensor.tensor
import
math
as
ptm
from
pytensor.tensor.basic
import
diagonal
from
pytensor.tensor.blockwise
import
Blockwise
from
pytensor.tensor.blockwise
import
Blockwise
from
pytensor.tensor.nlinalg
import
kron
,
matrix_dot
from
pytensor.tensor.nlinalg
import
kron
,
matrix_dot
from
pytensor.tensor.shape
import
reshape
from
pytensor.tensor.shape
import
reshape
...
@@ -260,10 +261,10 @@ class SolveBase(Op):
...
@@ -260,10 +261,10 @@ class SolveBase(Op):
raise
ValueError
(
f
"`b` must have {self.b_ndim} dims; got {b.type} instead."
)
raise
ValueError
(
f
"`b` must have {self.b_ndim} dims; got {b.type} instead."
)
# Infer dtype by solving the most simple case with 1x1 matrices
# Infer dtype by solving the most simple case with 1x1 matrices
inp_arr
=
[
np
.
eye
(
1
)
.
astype
(
A
.
dtype
),
np
.
eye
(
1
)
.
astype
(
b
.
dtype
)]
o_dtype
=
scipy_linalg
.
solve
(
out_arr
=
[[
None
]]
np
.
ones
((
1
,
1
),
dtype
=
A
.
dtype
),
self
.
perform
(
None
,
inp_arr
,
out_arr
)
np
.
ones
((
1
,),
dtype
=
b
.
dtype
),
o_dtype
=
out_arr
[
0
][
0
]
.
dtype
)
.
dtype
x
=
tensor
(
dtype
=
o_dtype
,
shape
=
b
.
type
.
shape
)
x
=
tensor
(
dtype
=
o_dtype
,
shape
=
b
.
type
.
shape
)
return
Apply
(
self
,
[
A
,
b
],
[
x
])
return
Apply
(
self
,
[
A
,
b
],
[
x
])
...
@@ -315,7 +316,7 @@ def _default_b_ndim(b, b_ndim):
...
@@ -315,7 +316,7 @@ def _default_b_ndim(b, b_ndim):
b
=
as_tensor_variable
(
b
)
b
=
as_tensor_variable
(
b
)
if
b_ndim
is
None
:
if
b_ndim
is
None
:
return
min
(
b
.
ndim
,
2
)
# By default assume the core case is a matrix
return
min
(
b
.
ndim
,
2
)
# By default
,
assume the core case is a matrix
class
CholeskySolve
(
SolveBase
):
class
CholeskySolve
(
SolveBase
):
...
@@ -332,6 +333,19 @@ class CholeskySolve(SolveBase):
...
@@ -332,6 +333,19 @@ class CholeskySolve(SolveBase):
kwargs
.
setdefault
(
"lower"
,
True
)
kwargs
.
setdefault
(
"lower"
,
True
)
super
()
.
__init__
(
**
kwargs
)
super
()
.
__init__
(
**
kwargs
)
def
make_node
(
self
,
*
inputs
):
# Allow base class to do input validation
super_apply
=
super
()
.
make_node
(
*
inputs
)
A
,
b
=
super_apply
.
inputs
[
super_out
]
=
super_apply
.
outputs
# The dtype of chol_solve does not match solve, which the base class checks
dtype
=
scipy_linalg
.
cho_solve
(
(
np
.
ones
((
1
,
1
),
dtype
=
A
.
dtype
),
False
),
np
.
ones
((
1
,),
dtype
=
b
.
dtype
),
)
.
dtype
out
=
tensor
(
dtype
=
dtype
,
shape
=
super_out
.
type
.
shape
)
return
Apply
(
self
,
[
A
,
b
],
[
out
])
def
perform
(
self
,
node
,
inputs
,
output_storage
):
def
perform
(
self
,
node
,
inputs
,
output_storage
):
C
,
b
=
inputs
C
,
b
=
inputs
rval
=
scipy_linalg
.
cho_solve
(
rval
=
scipy_linalg
.
cho_solve
(
...
@@ -499,8 +513,33 @@ class Solve(SolveBase):
...
@@ -499,8 +513,33 @@ class Solve(SolveBase):
)
)
def
__init__
(
self
,
*
,
assume_a
=
"gen"
,
**
kwargs
):
def
__init__
(
self
,
*
,
assume_a
=
"gen"
,
**
kwargs
):
if
assume_a
not
in
(
"gen"
,
"sym"
,
"her"
,
"pos"
):
# Triangular and diagonal are handled outside of Solve
raise
ValueError
(
f
"{assume_a} is not a recognized matrix structure"
)
valid_options
=
[
"gen"
,
"sym"
,
"her"
,
"pos"
,
"tridiagonal"
,
"banded"
]
assume_a
=
assume_a
.
lower
()
# We use the old names as the different dispatches are more likely to support them
long_to_short
=
{
"general"
:
"gen"
,
"symmetric"
:
"sym"
,
"hermitian"
:
"her"
,
"positive definite"
:
"pos"
,
}
assume_a
=
long_to_short
.
get
(
assume_a
,
assume_a
)
if
assume_a
not
in
valid_options
:
raise
ValueError
(
f
"Invalid assume_a: {assume_a}. It must be one of {valid_options} or {list(long_to_short.keys())}"
)
if
assume_a
in
(
"tridiagonal"
,
"banded"
):
from
scipy
import
__version__
as
sp_version
if
tuple
(
map
(
int
,
sp_version
.
split
(
"."
)[:
-
1
]))
<
(
1
,
15
):
warnings
.
warn
(
f
"assume_a={assume_a} requires scipy>=1.5.0. Defaulting to assume_a='gen'."
,
UserWarning
,
)
assume_a
=
"gen"
super
()
.
__init__
(
**
kwargs
)
super
()
.
__init__
(
**
kwargs
)
self
.
assume_a
=
assume_a
self
.
assume_a
=
assume_a
...
@@ -536,10 +575,12 @@ def solve(
...
@@ -536,10 +575,12 @@ def solve(
a
,
a
,
b
,
b
,
*
,
*
,
assume_a
=
"gen"
,
lower
:
bool
=
False
,
lower
=
False
,
overwrite_a
:
bool
=
False
,
transposed
=
False
,
overwrite_b
:
bool
=
False
,
check_finite
=
True
,
check_finite
:
bool
=
True
,
assume_a
:
str
=
"gen"
,
transposed
:
bool
=
False
,
b_ndim
:
int
|
None
=
None
,
b_ndim
:
int
|
None
=
None
,
):
):
"""Solves the linear equation set ``a * x = b`` for the unknown ``x`` for square ``a`` matrix.
"""Solves the linear equation set ``a * x = b`` for the unknown ``x`` for square ``a`` matrix.
...
@@ -548,14 +589,19 @@ def solve(
...
@@ -548,14 +589,19 @@ def solve(
corresponding string to ``assume_a`` key chooses the dedicated solver.
corresponding string to ``assume_a`` key chooses the dedicated solver.
The available options are
The available options are
=================== ========
=================== ================================
generic matrix 'gen'
diagonal 'diagonal'
symmetric 'sym'
tridiagonal 'tridiagonal'
hermitian 'her'
banded 'banded'
positive definite 'pos'
upper triangular 'upper triangular'
=================== ========
lower triangular 'lower triangular'
symmetric 'symmetric' (or 'sym')
hermitian 'hermitian' (or 'her')
positive definite 'positive definite' (or 'pos')
general 'general' (or 'gen')
=================== ================================
If omitted, ``'gen'`` is the default structure.
If omitted, ``'gen
eral
'`` is the default structure.
The datatype of the arrays define which solver is called regardless
The datatype of the arrays define which solver is called regardless
of the values. In other words, even when the complex array entries have
of the values. In other words, even when the complex array entries have
...
@@ -568,23 +614,52 @@ def solve(
...
@@ -568,23 +614,52 @@ def solve(
Square input data
Square input data
b : (..., N, NRHS) array_like
b : (..., N, NRHS) array_like
Input data for the right hand side.
Input data for the right hand side.
lower : bool, optional
lower : bool, default False
If True, use only the data contained in the lower triangle of `a`. Default
Ignored unless ``assume_a`` is one of ``'sym'``, ``'her'``, or ``'pos'``.
is to use upper triangle. (ignored for ``'gen'``)
If True, the calculation uses only the data in the lower triangle of `a`;
transposed: bool, optional
entries above the diagonal are ignored. If False (default), the
If True, solves the system A^T x = b. Default is False.
calculation uses only the data in the upper triangle of `a`; entries
below the diagonal are ignored.
overwrite_a : bool
Unused by PyTensor. PyTensor will always perform the operation in-place if possible.
overwrite_b : bool
Unused by PyTensor. PyTensor will always perform the operation in-place if possible.
check_finite : bool, optional
check_finite : bool, optional
Whether to check that the input matrices contain only finite numbers.
Whether to check that the input matrices contain only finite numbers.
Disabling may give a performance gain, but may result in problems
Disabling may give a performance gain, but may result in problems
(crashes, non-termination) if the inputs do contain infinities or NaNs.
(crashes, non-termination) if the inputs do contain infinities or NaNs.
assume_a : str, optional
assume_a : str, optional
Valid entries are explained above.
Valid entries are explained above.
transposed: bool, default False
If True, solves the system A^T x = b. Default is False.
b_ndim : int
b_ndim : int
Whether the core case of b is a vector (1) or matrix (2).
Whether the core case of b is a vector (1) or matrix (2).
This will influence how batched dimensions are interpreted.
This will influence how batched dimensions are interpreted.
By default, we assume b_ndim = b.ndim is 2 if b.ndim > 1, else 1.
"""
"""
assume_a
=
assume_a
.
lower
()
if
assume_a
in
(
"lower triangular"
,
"upper triangular"
):
lower
=
"lower"
in
assume_a
return
solve_triangular
(
a
,
b
,
lower
=
lower
,
trans
=
transposed
,
check_finite
=
check_finite
,
b_ndim
=
b_ndim
,
)
b_ndim
=
_default_b_ndim
(
b
,
b_ndim
)
b_ndim
=
_default_b_ndim
(
b
,
b_ndim
)
if
assume_a
==
"diagonal"
:
a_diagonal
=
diagonal
(
a
,
axis1
=-
2
,
axis2
=-
1
)
b_transposed
=
b
[
None
,
:]
if
b_ndim
==
1
else
b
.
mT
x
=
(
b_transposed
/
pt
.
expand_dims
(
a_diagonal
,
-
2
))
.
mT
if
b_ndim
==
1
:
x
=
x
.
squeeze
(
-
1
)
return
x
if
transposed
:
if
transposed
:
a
=
a
.
mT
a
=
a
.
mT
lower
=
not
lower
lower
=
not
lower
...
...
tests/tensor/test_slinalg.py
浏览文件 @
a149f6c9
...
@@ -10,6 +10,8 @@ import pytensor
...
@@ -10,6 +10,8 @@ import pytensor
from
pytensor
import
function
,
grad
from
pytensor
import
function
,
grad
from
pytensor
import
tensor
as
pt
from
pytensor
import
tensor
as
pt
from
pytensor.configdefaults
import
config
from
pytensor.configdefaults
import
config
from
pytensor.graph.basic
import
equal_computations
from
pytensor.tensor
import
TensorVariable
from
pytensor.tensor.slinalg
import
(
from
pytensor.tensor.slinalg
import
(
Cholesky
,
Cholesky
,
CholeskySolve
,
CholeskySolve
,
...
@@ -211,8 +213,8 @@ class TestSolveBase:
...
@@ -211,8 +213,8 @@ class TestSolveBase:
)
)
def
test_solve_raises_on_invalid_
A
():
def
test_solve_raises_on_invalid_
assume_a
():
with
pytest
.
raises
(
ValueError
,
match
=
"
is not a recognized matrix structure
"
):
with
pytest
.
raises
(
ValueError
,
match
=
"
Invalid assume_a: test. It must be one of
"
):
Solve
(
assume_a
=
"test"
,
b_ndim
=
2
)
Solve
(
assume_a
=
"test"
,
b_ndim
=
2
)
...
@@ -225,6 +227,10 @@ solve_test_cases = [
...
@@ -225,6 +227,10 @@ solve_test_cases = [
(
"pos"
,
False
,
False
),
(
"pos"
,
False
,
False
),
(
"pos"
,
True
,
False
),
(
"pos"
,
True
,
False
),
(
"pos"
,
True
,
True
),
(
"pos"
,
True
,
True
),
(
"diagonal"
,
False
,
False
),
(
"diagonal"
,
False
,
True
),
(
"tridiagonal"
,
False
,
False
),
(
"tridiagonal"
,
False
,
True
),
]
]
solve_test_ids
=
[
solve_test_ids
=
[
f
'{assume_a}_{"lower" if lower else "upper"}_{"A^T" if transposed else "A"}'
f
'{assume_a}_{"lower" if lower else "upper"}_{"A^T" if transposed else "A"}'
...
@@ -239,6 +245,16 @@ class TestSolve(utt.InferShapeTester):
...
@@ -239,6 +245,16 @@ class TestSolve(utt.InferShapeTester):
return
x
@
x
.
T
return
x
@
x
.
T
elif
assume_a
==
"sym"
:
elif
assume_a
==
"sym"
:
return
(
x
+
x
.
T
)
/
2
return
(
x
+
x
.
T
)
/
2
elif
assume_a
==
"diagonal"
:
eye_fn
=
pt
.
eye
if
isinstance
(
x
,
TensorVariable
)
else
np
.
eye
return
x
*
eye_fn
(
x
.
shape
[
1
])
elif
assume_a
==
"tridiagonal"
:
eye_fn
=
pt
.
eye
if
isinstance
(
x
,
TensorVariable
)
else
np
.
eye
return
x
*
(
eye_fn
(
x
.
shape
[
1
],
k
=
0
)
+
eye_fn
(
x
.
shape
[
1
],
k
=-
1
)
+
eye_fn
(
x
.
shape
[
1
],
k
=
1
)
)
else
:
else
:
return
x
return
x
...
@@ -346,6 +362,22 @@ class TestSolve(utt.InferShapeTester):
...
@@ -346,6 +362,22 @@ class TestSolve(utt.InferShapeTester):
lambda
A
,
b
:
solve_op
(
A_func
(
A
),
b
),
[
A_val
,
b_val
],
3
,
rng
,
eps
=
eps
lambda
A
,
b
:
solve_op
(
A_func
(
A
),
b
),
[
A_val
,
b_val
],
3
,
rng
,
eps
=
eps
)
)
def
test_solve_tringular_indirection
(
self
):
a
=
pt
.
matrix
(
"a"
)
b
=
pt
.
vector
(
"b"
)
indirect
=
solve
(
a
,
b
,
assume_a
=
"lower triangular"
)
direct
=
solve_triangular
(
a
,
b
,
lower
=
True
,
trans
=
False
)
assert
equal_computations
([
indirect
],
[
direct
])
indirect
=
solve
(
a
,
b
,
assume_a
=
"upper triangular"
)
direct
=
solve_triangular
(
a
,
b
,
lower
=
False
,
trans
=
False
)
assert
equal_computations
([
indirect
],
[
direct
])
indirect
=
solve
(
a
,
b
,
assume_a
=
"upper triangular"
,
transposed
=
True
)
direct
=
solve_triangular
(
a
,
b
,
lower
=
False
,
trans
=
True
)
assert
equal_computations
([
indirect
],
[
direct
])
class
TestSolveTriangular
(
utt
.
InferShapeTester
):
class
TestSolveTriangular
(
utt
.
InferShapeTester
):
@staticmethod
@staticmethod
...
...
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