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testgroup
pytensor
Commits
8850e88d
提交
8850e88d
authored
6月 19, 2016
作者:
Ciyong Chen
浏览文件
操作
浏览文件
下载
电子邮件补丁
差异文件
add blas threads function declaration and restore blas threads after foring to 1
上级
b834babe
显示空白字符变更
内嵌
并排
正在显示
3 个修改的文件
包含
86 行增加
和
27 行删除
+86
-27
blas_headers.py
theano/tensor/blas_headers.py
+43
-0
corr.py
theano/tensor/nnet/corr.py
+19
-16
corr_gemm.c
theano/tensor/nnet/corr_gemm.c
+24
-11
没有找到文件。
theano/tensor/blas_headers.py
浏览文件 @
8850e88d
...
@@ -961,6 +961,49 @@ def blas_header_text():
...
@@ -961,6 +961,49 @@ def blas_header_text():
return
header
return
header
def
mkl_threads_text
():
"""C header for MKL threads interface"""
header
=
"""
extern "C"
{
int MKL_Set_Num_Threads_Local(int);
#define mkl_set_num_threads_local MKL_Set_Num_Threads_Local
void MKL_Set_Num_Threads(int);
#define mkl_set_num_threads MKL_Set_Num_Threads
int MKL_Get_Max_Threads(void);
#define mkl_get_max_threads MKL_Get_Max_Threads
int MKL_Domain_Set_Num_Threads(int, int);
#define mkl_domain_set_num_threads MKL_Domain_Set_Num_Threads
int MKL_Domain_Get_Max_Threads(int);
#define mkl_domain_get_max_threads MKL_Domain_Get_Max_Threads
void MKL_Set_Dynamic(int);
#define mkl_set_dynamic MKL_Set_Dynamic
int MKL_Get_Dynamic(void);
#define mkl_get_dynamic MKL_Get_Dynamic
}
"""
return
header
def
openblas_threads_text
():
"""C header for OpenBLAS threads interface"""
header
=
"""
extern "C"
{
void openblas_set_num_threads(int);
void goto_set_num_threads(int);
int openblas_get_num_threads(void);
}
"""
return
header
def
blas_header_version
():
def
blas_header_version
():
# Version for the base header
# Version for the base header
version
=
(
1
,)
version
=
(
1
,)
...
...
theano/tensor/nnet/corr.py
浏览文件 @
8850e88d
...
@@ -9,7 +9,7 @@ from theano import Apply
...
@@ -9,7 +9,7 @@ from theano import Apply
from
theano
import
gof
from
theano
import
gof
from
theano.tensor
import
as_tensor_variable
,
TensorType
from
theano.tensor
import
as_tensor_variable
,
TensorType
from
theano.tensor.nnet.abstract_conv
import
get_conv_output_shape
from
theano.tensor.nnet.abstract_conv
import
get_conv_output_shape
from
theano.tensor
.blas_headers
import
blas_header_text
from
theano.tensor
import
blas_headers
from
theano.tensor.blas
import
ldflags
,
blas_header_version
from
theano.tensor.blas
import
ldflags
,
blas_header_version
_logger
=
logging
.
getLogger
(
__name__
)
_logger
=
logging
.
getLogger
(
__name__
)
...
@@ -86,7 +86,12 @@ class BaseCorrMM(gof.OpenMPOp):
...
@@ -86,7 +86,12 @@ class BaseCorrMM(gof.OpenMPOp):
str
(
self
.
filter_dilation
))
str
(
self
.
filter_dilation
))
def
c_support_code
(
self
):
def
c_support_code
(
self
):
return
blas_header_text
()
ccodes
=
blas_headers
.
blas_header_text
()
if
self
.
blas_type
==
'openblas'
:
ccodes
+=
blas_headers
.
openblas_threads_text
()
elif
self
.
blas_type
==
'mkl'
:
ccodes
+=
blas_headers
.
mkl_threads_text
()
return
ccodes
def
c_libraries
(
self
):
def
c_libraries
(
self
):
return
ldflags
()
return
ldflags
()
...
@@ -105,10 +110,6 @@ class BaseCorrMM(gof.OpenMPOp):
...
@@ -105,10 +110,6 @@ class BaseCorrMM(gof.OpenMPOp):
def
c_headers
(
self
):
def
c_headers
(
self
):
headers
=
[
'<stdio.h>'
]
headers
=
[
'<stdio.h>'
]
headers
+=
super
(
BaseCorrMM
,
self
)
.
c_headers
()
headers
+=
super
(
BaseCorrMM
,
self
)
.
c_headers
()
if
self
.
blas_type
==
'openblas'
:
headers
+=
[
'cblas.h'
]
if
self
.
blas_type
==
'mkl'
:
headers
+=
[
'mkl.h'
]
return
headers
return
headers
def
c_code_cache_version
(
self
):
def
c_code_cache_version
(
self
):
...
@@ -137,20 +138,22 @@ class BaseCorrMM(gof.OpenMPOp):
...
@@ -137,20 +138,22 @@ class BaseCorrMM(gof.OpenMPOp):
if
self
.
openmp
:
if
self
.
openmp
:
sub
[
'omp_flags'
]
=
'#pragma omp parallel for schedule(static)'
sub
[
'omp_flags'
]
=
'#pragma omp parallel for schedule(static)'
sub
[
'omp_max_threads'
]
=
'omp_get_max_threads()'
sub
[
'omp_max_threads'
]
=
'omp_get_max_threads()'
sub
[
'omp_set_threads'
]
=
'omp_set_num_threads'
sub
[
'set_omp_threads'
]
=
'omp_set_num_threads'
sub
[
'omp_get_threads'
]
=
'omp_get_thread_num()'
sub
[
'get_omp_threads'
]
=
'omp_get_thread_num()'
else
:
sub
[
'omp_flags'
]
=
''
sub
[
'omp_max_threads'
]
=
1
sub
[
'omp_set_threads'
]
=
''
sub
[
'omp_get_threads'
]
=
0
if
self
.
blas_type
==
'openblas'
:
if
self
.
blas_type
==
'openblas'
:
sub
[
'blas_flags'
]
=
'openblas_set_num_threads(1)'
sub
[
'set_blas_threads'
]
=
'openblas_set_num_threads'
sub
[
'get_blas_threads'
]
=
'openblas_get_num_threads()'
elif
self
.
blas_type
==
'mkl'
:
elif
self
.
blas_type
==
'mkl'
:
sub
[
'blas_flags'
]
=
'mkl_set_num_threads(1)'
sub
[
'set_blas_threads'
]
=
'mkl_set_num_threads'
sub
[
'get_blas_threads'
]
=
'mkl_get_max_threads()'
else
:
else
:
sub
[
'blas_flags'
]
=
''
sub
[
'omp_flags'
]
=
''
sub
[
'omp_max_threads'
]
=
'1'
sub
[
'set_omp_threads'
]
=
''
sub
[
'get_omp_threads'
]
=
'0'
sub
[
'set_blas_threads'
]
=
''
sub
[
'get_blas_threads'
]
=
'0'
files
=
[
'corr_gemm.c'
]
files
=
[
'corr_gemm.c'
]
codes
=
[
open
(
os
.
path
.
join
(
os
.
path
.
split
(
__file__
)[
0
],
f
))
.
read
()
codes
=
[
open
(
os
.
path
.
join
(
os
.
path
.
split
(
__file__
)[
0
],
f
))
.
read
()
...
...
theano/tensor/nnet/corr_gemm.c
浏览文件 @
8850e88d
...
@@ -184,7 +184,10 @@ PyArrayObject* corrMM(PyArrayObject* bottom,
...
@@ -184,7 +184,10 @@ PyArrayObject* corrMM(PyArrayObject* bottom,
}
}
// Create temporary columns
// Create temporary columns
const
int
max_threads
=
%
(
omp_max_threads
)
s
<
batchSize
?
%
(
omp_max_threads
)
s
:
batchSize
;
int
max_threads
=
%
(
omp_max_threads
)
s
;
if
(
batchSize
<
max_threads
)
{
max_threads
=
batchSize
;
}
npy_intp
col_dim
[
3
];
npy_intp
col_dim
[
3
];
col_dim
[
0
]
=
(
npy_intp
)
max_threads
;
col_dim
[
0
]
=
(
npy_intp
)
max_threads
;
col_dim
[
1
]
=
(
npy_intp
)(
nChannels
*
kW
*
kH
);
col_dim
[
1
]
=
(
npy_intp
)(
nChannels
*
kW
*
kH
);
...
@@ -216,22 +219,23 @@ PyArrayObject* corrMM(PyArrayObject* bottom,
...
@@ -216,22 +219,23 @@ PyArrayObject* corrMM(PyArrayObject* bottom,
char
Trans
=
'T'
;
char
Trans
=
'T'
;
PyArrayObject
*
output
;
PyArrayObject
*
output
;
%
(
omp_set
_threads
)
s
(
max_threads
);
%
(
set_omp
_threads
)
s
(
max_threads
);
if
(
direction
==
0
)
{
// forward pass
if
(
direction
==
0
)
{
// forward pass
output
=
top
;
output
=
top
;
// valid correlation: im2col, then gemm
// valid correlation: im2col, then gemm
// Iterate over batch
// Iterate over batch
int
blas_threads_saved
=
%
(
get_blas_threads
)
s
;
// Always forcing gemm to one thread when OpenMP is enalbed for best and stable performance.
%
(
set_blas_threads
)
s
(
1
);
%
(
omp_flags
)
s
%
(
omp_flags
)
s
for
(
int
n
=
0
;
n
<
batchSize
;
++
n
)
{
for
(
int
n
=
0
;
n
<
batchSize
;
++
n
)
{
int
tid
=
%
(
omp_get
_threads
)
s
;
int
tid
=
%
(
get_omp
_threads
)
s
;
// First, im2col
// First, im2col
im2col
((
%
(
float_type
)
s
*
)
PyArray_DATA
(
bottom
)
+
n
*
bottom_stride
,
nChannels
,
bottomHeight
,
im2col
((
%
(
float_type
)
s
*
)
PyArray_DATA
(
bottom
)
+
n
*
bottom_stride
,
nChannels
,
bottomHeight
,
bottomWidth
,
kH
,
kW
,
dilH
,
dilW
,
padH
,
padW
,
dH
,
dW
,
bottomWidth
,
kH
,
kW
,
dilH
,
dilW
,
padH
,
padW
,
dH
,
dW
,
(
%
(
float_type
)
s
*
)
PyArray_DATA
(
col
)
+
tid
*
col_stride
);
(
%
(
float_type
)
s
*
)
PyArray_DATA
(
col
)
+
tid
*
col_stride
);
// Second, gemm
// Second, gemm
// Always forcing gemm to one thread here for best and stable performance.
%
(
blas_flags
)
s
;
%
(
gemm
)
s
(
&
NTrans
,
&
NTrans
,
%
(
gemm
)
s
(
&
NTrans
,
&
NTrans
,
&
N_
,
&
M_
,
&
K_
,
&
N_
,
&
M_
,
&
K_
,
&
one
,
&
one
,
...
@@ -240,6 +244,8 @@ PyArrayObject* corrMM(PyArrayObject* bottom,
...
@@ -240,6 +244,8 @@ PyArrayObject* corrMM(PyArrayObject* bottom,
&
zero
,
&
zero
,
(
%
(
float_type
)
s
*
)
PyArray_DATA
(
top
)
+
n
*
top_stride
,
&
N_
);
(
%
(
float_type
)
s
*
)
PyArray_DATA
(
top
)
+
n
*
top_stride
,
&
N_
);
}
}
// Restore to previous blas threads
%
(
set_blas_threads
)
s
(
blas_threads_saved
);
/*
/*
// Original caffe code for comparison
// Original caffe code for comparison
...
@@ -291,10 +297,13 @@ PyArrayObject* corrMM(PyArrayObject* bottom,
...
@@ -291,10 +297,13 @@ PyArrayObject* corrMM(PyArrayObject* bottom,
// valid convolution: im2col, then gemm
// valid convolution: im2col, then gemm
// Iterate over batch
// Iterate over batch
int
blas_threads_saved
=
%
(
get_blas_threads
)
s
;
// Always forcing gemm to one thread when OpenMP is enalbed for best and stable performance.
%
(
set_blas_threads
)
s
(
1
);
// OMP for batch-level paralization
// OMP for batch-level paralization
%
(
omp_flags
)
s
%
(
omp_flags
)
s
for
(
int
n
=
0
;
n
<
batchSize
;
++
n
)
{
for
(
int
n
=
0
;
n
<
batchSize
;
++
n
)
{
int
tid
=
%
(
omp_get
_threads
)
s
;
int
tid
=
%
(
get_omp
_threads
)
s
;
// First, im2col
// First, im2col
im2col
((
%
(
float_type
)
s
*
)
PyArray_DATA
(
bottom
)
+
n
*
bottom_stride
,
nChannels
,
bottomHeight
,
im2col
((
%
(
float_type
)
s
*
)
PyArray_DATA
(
bottom
)
+
n
*
bottom_stride
,
nChannels
,
bottomHeight
,
bottomWidth
,
kH
,
kW
,
dilH
,
dilW
,
padH
,
padW
,
dH
,
dW
,
bottomWidth
,
kH
,
kW
,
dilH
,
dilW
,
padH
,
padW
,
dH
,
dW
,
...
@@ -303,8 +312,6 @@ PyArrayObject* corrMM(PyArrayObject* bottom,
...
@@ -303,8 +312,6 @@ PyArrayObject* corrMM(PyArrayObject* bottom,
// Note that we accumulate into weight. We do so by setting beta = 0
// Note that we accumulate into weight. We do so by setting beta = 0
// for the first iteration and beta = 1 for subsequent ones. (This
// for the first iteration and beta = 1 for subsequent ones. (This
// is faster than setting weight to all zeros before the loop.)
// is faster than setting weight to all zeros before the loop.)
// Always forcing gemm to one thread here for best and stable performance.
%
(
blas_flags
)
s
;
%
(
gemm
)
s
(
&
Trans
,
&
NTrans
,
%
(
gemm
)
s
(
&
Trans
,
&
NTrans
,
&
K_
,
&
M_
,
&
N_
,
&
K_
,
&
M_
,
&
N_
,
&
one
,
&
one
,
...
@@ -314,6 +321,9 @@ PyArrayObject* corrMM(PyArrayObject* bottom,
...
@@ -314,6 +321,9 @@ PyArrayObject* corrMM(PyArrayObject* bottom,
(
%
(
float_type
)
s
*
)
PyArray_DATA
(
local_weight
)
+
(
%
(
float_type
)
s
*
)
PyArray_DATA
(
local_weight
)
+
tid
*
weight_dim
[
1
],
&
K_
);
tid
*
weight_dim
[
1
],
&
K_
);
}
}
// Restore to previous blas threads
%
(
set_blas_threads
)
s
(
blas_threads_saved
);
//aggregate weights
//aggregate weights
memset
((
%
(
float_type
)
s
*
)
PyArray_DATA
(
weight
),
0
,
M_
*
K_
*
sizeof
(
%
(
float_type
)
s
));
memset
((
%
(
float_type
)
s
*
)
PyArray_DATA
(
weight
),
0
,
M_
*
K_
*
sizeof
(
%
(
float_type
)
s
));
/*
/*
...
@@ -365,12 +375,13 @@ PyArrayObject* corrMM(PyArrayObject* bottom,
...
@@ -365,12 +375,13 @@ PyArrayObject* corrMM(PyArrayObject* bottom,
// full convolution: gemm, then col2im
// full convolution: gemm, then col2im
// Iterate over batch
// Iterate over batch
int
blas_threads_saved
=
%
(
get_blas_threads
)
s
;
// Always forcing gemm to one thread when OpenMP is enalbed for best and stable performance.
%
(
set_blas_threads
)
s
(
1
);
%
(
omp_flags
)
s
%
(
omp_flags
)
s
for
(
int
n
=
0
;
n
<
batchSize
;
++
n
)
{
for
(
int
n
=
0
;
n
<
batchSize
;
++
n
)
{
// gemm into columns
// gemm into columns
int
tid
=
%
(
omp_get_threads
)
s
;
int
tid
=
%
(
get_omp_threads
)
s
;
// Always forcing gemm to one thread here for best and stable performance.
%
(
blas_flags
)
s
;
%
(
gemm
)
s
(
&
NTrans
,
&
Trans
,
%
(
gemm
)
s
(
&
NTrans
,
&
Trans
,
&
N_
,
&
K_
,
&
M_
,
&
N_
,
&
K_
,
&
M_
,
&
one
,
&
one
,
...
@@ -383,6 +394,8 @@ PyArrayObject* corrMM(PyArrayObject* bottom,
...
@@ -383,6 +394,8 @@ PyArrayObject* corrMM(PyArrayObject* bottom,
kH
,
kW
,
dilH
,
dilW
,
padH
,
padW
,
kH
,
kW
,
dilH
,
dilW
,
padH
,
padW
,
dH
,
dW
,
(
%
(
float_type
)
s
*
)
PyArray_DATA
(
bottom
)
+
n
*
bottom_stride
);
dH
,
dW
,
(
%
(
float_type
)
s
*
)
PyArray_DATA
(
bottom
)
+
n
*
bottom_stride
);
}
}
// Restore to previous blas threads
%
(
set_blas_threads
)
s
(
blas_threads_saved
);
/*
/*
// Original caffe code for comparison
// Original caffe code for comparison
// Note that this code was translated from the Theano GPU code,
// Note that this code was translated from the Theano GPU code,
...
...
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