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testgroup
pytensor
Commits
6298f875
提交
6298f875
authored
11月 17, 2014
作者:
Roy Xue
浏览文件
操作
浏览文件
下载
电子邮件补丁
差异文件
PEP format check
上级
84205775
隐藏空白字符变更
内嵌
并排
正在显示
2 个修改的文件
包含
111 行增加
和
100 行删除
+111
-100
profiling.py
theano/compile/profiling.py
+12
-12
vm.py
theano/gof/vm.py
+99
-88
没有找到文件。
theano/compile/profiling.py
浏览文件 @
6298f875
...
...
@@ -1012,19 +1012,19 @@ class ProfileStats(object):
# Store the max of some stats by any function in this profile.
max_sum_size
=
max
(
max_sum_size
,
sum_size
)
max_node_memory_size
[
0
]
=
max
(
max_node_memory_size
[
0
],
sum
(
old_running_memory
[
0
]))
sum
(
old_running_memory
[
0
]))
max_running_max_memory_size
[
0
]
=
max
(
max_running_max_memory_size
[
1
],
sum
(
old_running_memory
[
2
]))
sum
(
old_running_memory
[
2
]))
# Separate CPU and GPU
max_node_memory_size
[
1
]
=
max
(
max_node_memory_size
[
1
],
old_running_memory
[
0
][
0
])
old_running_memory
[
0
][
0
])
max_node_memory_size
[
2
]
=
max
(
max_node_memory_size
[
2
],
old_running_memory
[
0
][
1
])
old_running_memory
[
0
][
1
])
max_running_max_memory_size
[
1
]
=
max
(
max_running_max_memory_size
[
1
],
old_running_memory
[
2
][
0
])
old_running_memory
[
2
][
0
])
max_running_max_memory_size
[
2
]
=
max
(
max_running_max_memory_size
[
2
],
old_running_memory
[
2
][
1
])
old_running_memory
[
2
][
1
])
max_node_memory_saved_by_inplace
=
max
(
max_node_memory_saved_by_inplace
,
old_running_memory
[
3
])
...
...
@@ -1033,19 +1033,19 @@ class ProfileStats(object):
# Store max of some stats with new order
new_max_node_memory_size
[
0
]
=
max
(
new_max_node_memory_size
[
0
],
sum
(
new_running_memory
[
0
]))
sum
(
new_running_memory
[
0
]))
new_max_running_max_memory_size
[
0
]
=
max
(
new_max_running_max_memory_size
[
0
],
sum
(
new_running_memory
[
2
]))
sum
(
new_running_memory
[
2
]))
# Separate CPU and GPU
new_max_node_memory_size
[
1
]
=
max
(
new_max_node_memory_size
[
1
],
new_running_memory
[
0
][
0
])
new_running_memory
[
0
][
0
])
new_max_node_memory_size
[
2
]
=
max
(
new_max_node_memory_size
[
2
],
new_running_memory
[
0
][
1
])
new_running_memory
[
0
][
1
])
new_max_running_max_memory_size
[
1
]
=
max
(
new_max_running_max_memory_size
[
1
],
new_running_memory
[
2
][
0
])
new_running_memory
[
2
][
0
])
new_max_running_max_memory_size
[
2
]
=
max
(
new_max_running_max_memory_size
[
2
],
new_running_memory
[
2
][
1
])
new_running_memory
[
2
][
1
])
new_max_node_memory_saved_by_inplace
=
max
(
new_max_node_memory_saved_by_inplace
,
new_running_memory
[
3
])
...
...
theano/gof/vm.py
浏览文件 @
6298f875
...
...
@@ -56,6 +56,7 @@ raise_with_op = link.raise_with_op
class
VM
(
object
):
"""
A VM object's __call__ method evaluates a Theano program.
...
...
@@ -83,6 +84,7 @@ class VM(object):
storage. False means it *must not* repeat that feedback.
"""
def
__init__
(
self
,
nodes
,
thunks
,
pre_call_clear
):
"""
Allocate a virtual machine.
...
...
@@ -159,10 +161,12 @@ class VM(object):
class
Loop
(
VM
):
"""
Unconditional start-to-finish program execution in Python.
No garbage collection is allowed on intermediate results.
"""
def
__call__
(
self
):
if
self
.
time_thunks
:
for
cont
in
self
.
pre_call_clear
:
...
...
@@ -188,10 +192,12 @@ class Loop(VM):
class
LoopGC
(
VM
):
"""
Unconditional start-to-finish program execution in Python.
Garbage collection is possible on intermediate results.
"""
def
__init__
(
self
,
nodes
,
thunks
,
pre_call_clear
,
post_thunk_clear
):
super
(
LoopGC
,
self
)
.
__init__
(
nodes
,
thunks
,
pre_call_clear
)
self
.
post_thunk_clear
=
post_thunk_clear
...
...
@@ -231,6 +237,7 @@ class LoopGC(VM):
class
Stack
(
VM
):
"""
Finish-to-start evalution order of thunks.
...
...
@@ -340,7 +347,7 @@ class Stack(VM):
apply_stack
=
list
(
self
.
base_apply_stack
)
last_apply_stack_len
=
-
1
#This record all function inputs/shared varibles and constants
#
This record all function inputs/shared varibles and constants
for
var
,
data
in
self
.
storage_map
.
iteritems
():
if
data
[
0
]
is
None
:
continue
...
...
@@ -396,7 +403,7 @@ class Stack(VM):
current_idx
=
self
.
node_idx
[
current_apply
]
self
.
call_counts
[
current_idx
]
+=
1
self
.
call_times
[
current_idx
]
+=
dt
#
#
Computing the memory footprint of the the op
# Computing the memory footprint of the the op
# ?? What about inplace .. if the op is inplace
# you don't actually ask for more memory!
for
(
idx
,
o
)
in
enumerate
(
...
...
@@ -411,7 +418,7 @@ class Stack(VM):
st
=
getattr
(
o
[
0
],
'strides'
,
'input no strides'
)
if
(
getattr
(
o
[
0
],
'flags'
,
False
)
and
o
[
0
]
.
flags
.
c_contiguous
):
o
[
0
]
.
flags
.
c_contiguous
):
st
=
'c'
elif
(
hasattr
(
data
[
0
],
'is_c_contiguous'
)
and
data
[
0
]
.
is_c_contiguous
()):
...
...
@@ -436,15 +443,16 @@ class Stack(VM):
if
all
(
compute_map
[
v
][
0
]
for
v
in
dependencies
[
i
]):
storage_map
[
i
][
0
]
=
None
input_index
.
append
(
current_apply
.
inputs
.
index
(
i
))
input_index
.
append
(
current_apply
.
inputs
.
index
(
i
))
#DO NOT set compute_map to 0
#
DO NOT set compute_map to 0
#If values become False and the
#
If values become False and the
#current_apply is still in the
#stack, this will cause it to be
#recomputed! This can cause wrong value
#with some combination of inplace op.
#
stack, this will cause it to be
#
recomputed! This can cause wrong value
#
with some combination of inplace op.
compute_map
[
i
][
0
]
=
2
if
(
config
.
warn
.
vm_gc_bug
and
current_apply
in
apply_stack
and
...
...
@@ -452,12 +460,13 @@ class Stack(VM):
'destroy_map'
,
False
)):
warnings
.
warn
(
"There was a bug that existed in the default Theano configuration,"
" only in the development version between July 5th 2012"
" and July 30th 2012. This was not in a released version."
" The bug was affecting this script."
,
#The stack level is not good when inside a Scan.
stacklevel
=
3
"There was a bug that existed in the default Theano configuration,"
" only in the development version between July 5th 2012"
" and July 30th 2012. This was not in a released version."
" The bug was affecting this script."
,
# The stack level is not good when
# inside a Scan.
stacklevel
=
3
)
self
.
node_cleared_order
.
append
(
input_index
)
...
...
@@ -465,9 +474,8 @@ class Stack(VM):
# -- Non-lazy case, need inputs
apply_stack
.
append
(
current_apply
)
apply_stack
.
extend
(
inp
.
owner
for
inp
in
current_deps
if
inp
.
owner
)
for
inp
in
current_deps
if
inp
.
owner
)
elif
not
computed_outs
:
#
...
...
@@ -511,7 +519,7 @@ class Stack(VM):
self
.
variable_shape
[
var
]
=
sh
st
=
getattr
(
o
[
0
],
'strides'
,
'input no strides'
)
if
(
getattr
(
o
[
0
],
'flags'
,
False
)
and
o
[
0
]
.
flags
.
c_contiguous
):
o
[
0
]
.
flags
.
c_contiguous
):
st
=
'c'
elif
(
hasattr
(
data
[
0
],
'is_c_contiguous'
)
and
data
[
0
]
.
is_c_contiguous
()):
...
...
@@ -523,7 +531,7 @@ class Stack(VM):
if
self
.
allow_gc
:
for
i
in
current_apply
.
inputs
:
if
(
dependencies
[
i
]
and
i
.
owner
and
i
not
in
self
.
outputs
):
i
not
in
self
.
outputs
):
empty_storage_map
=
True
for
x
in
dependencies
[
i
]:
if
not
compute_map
[
x
][
0
]:
...
...
@@ -531,9 +539,10 @@ class Stack(VM):
break
if
empty_storage_map
:
storage_map
[
i
][
0
]
=
None
input_index
.
append
(
current_apply
.
inputs
.
index
(
i
))
#See the not lazy gc code for explanations
#of compute_map change
input_index
.
append
(
current_apply
.
inputs
.
index
(
i
))
# See the not lazy gc code for explanations
# of compute_map change
compute_map
[
i
][
0
]
=
2
self
.
node_cleared_order
.
append
(
input_index
)
...
...
@@ -560,6 +569,7 @@ try:
import
lazylinker_c
class
CVM
(
lazylinker_c
.
CLazyLinker
,
VM
):
def
__init__
(
self
,
*
args
,
**
kwargs
):
lazylinker_c
.
CLazyLinker
.
__init__
(
self
,
*
args
,
**
kwargs
)
# skip VM.__init__
...
...
@@ -576,6 +586,7 @@ except (OSError, theano.gof.cmodule.MissingGXX), e:
class
VM_Linker
(
link
.
LocalLinker
):
"""
Class that satisfies the Linker interface by acting as a VM factory.
"""
...
...
@@ -625,9 +636,9 @@ class VM_Linker(link.LocalLinker):
associated to self, else, a new VM_Linker associated to fgraph.
"""
if
(
config
.
profile
and
hasattr
(
theano
,
'sandbox'
)
and
hasattr
(
theano
.
sandbox
,
'cuda'
)
and
theano
.
sandbox
.
cuda
.
cuda_enabled
):
hasattr
(
theano
,
'sandbox'
)
and
hasattr
(
theano
.
sandbox
,
'cuda'
)
and
theano
.
sandbox
.
cuda
.
cuda_enabled
):
if
os
.
environ
.
get
(
'CUDA_LAUNCH_BLOCKING'
,
'0'
)
!=
'1'
:
raise
Exception
(
"You are running the Theano profiler with CUDA enabled."
...
...
@@ -644,12 +655,12 @@ class VM_Linker(link.LocalLinker):
# Warning: make sure to forward the correct values of
# all parameters to __init__ here.
return
type
(
self
)(
allow_gc
=
self
.
allow_gc
,
use_cloop
=
self
.
use_cloop
,
callback
=
self
.
callback
,
lazy
=
self
.
lazy
,
schedule
=
self
.
schedule
)
.
accept
(
fgraph
,
no_recycling
)
allow_gc
=
self
.
allow_gc
,
use_cloop
=
self
.
use_cloop
,
callback
=
self
.
callback
,
lazy
=
self
.
lazy
,
schedule
=
self
.
schedule
)
.
accept
(
fgraph
,
no_recycling
)
self
.
fgraph
=
fgraph
self
.
no_recycling
=
no_recycling
return
self
...
...
@@ -700,17 +711,17 @@ class VM_Linker(link.LocalLinker):
return
dependencies
def
make_vm
(
self
,
nodes
,
thunks
,
input_storage
,
output_storage
,
storage_map
,
post_thunk_clear
,
computed
,
compute_map
,
updated_vars
):
input_storage
,
output_storage
,
storage_map
,
post_thunk_clear
,
computed
,
compute_map
,
updated_vars
):
pre_call_clear
=
[
storage_map
[
v
]
for
v
in
self
.
no_recycling
]
if
(
self
.
callback
is
not
None
or
(
config
.
profile
and
config
.
profile_memory
)):
(
config
.
profile
and
config
.
profile_memory
)):
if
self
.
use_cloop
and
self
.
callback
is
not
None
:
logger
.
warn
(
'CVM does not support callback, using Stack VM.'
)
...
...
@@ -721,11 +732,11 @@ class VM_Linker(link.LocalLinker):
if
self
.
allow_gc
:
deps
=
self
.
compute_gc_dependencies
(
storage_map
)
vm
=
Stack
(
nodes
,
thunks
,
pre_call_clear
,
storage_map
,
compute_map
,
self
.
fgraph
,
self
.
allow_gc
,
dependencies
=
deps
,
callback
=
self
.
callback
)
nodes
,
thunks
,
pre_call_clear
,
storage_map
,
compute_map
,
self
.
fgraph
,
self
.
allow_gc
,
dependencies
=
deps
,
callback
=
self
.
callback
)
elif
self
.
use_cloop
:
# create a map from nodes to ints and vars to ints
nodes_idx
=
{}
...
...
@@ -747,9 +758,9 @@ class VM_Linker(link.LocalLinker):
# put storage_map and compute_map into a int-based scheme
n_applies
=
len
(
nodes
)
storage_map_list
=
[
storage_map
[
vars_idx_inv
[
i
]]
for
i
in
xrange
(
len
(
vars_idx_inv
))]
for
i
in
xrange
(
len
(
vars_idx_inv
))]
compute_map_list
=
[
compute_map
[
vars_idx_inv
[
i
]]
for
i
in
xrange
(
len
(
vars_idx_inv
))]
for
i
in
xrange
(
len
(
vars_idx_inv
))]
if
nodes
:
assert
type
(
storage_map_list
[
0
])
is
list
assert
type
(
compute_map_list
[
0
])
is
list
...
...
@@ -796,7 +807,7 @@ class VM_Linker(link.LocalLinker):
prereq_var_idxs
=
[]
for
prereq_node
in
ords
.
get
(
node
,
[]):
prereq_var_idxs
.
extend
(
[
vars_idx
[
v
]
for
v
in
prereq_node
.
outputs
])
[
vars_idx
[
v
]
for
v
in
prereq_node
.
outputs
])
prereq_var_idxs
=
list
(
set
(
prereq_var_idxs
))
prereq_var_idxs
.
sort
()
# TODO: why sort?
node_prereqs
.
append
(
prereq_var_idxs
)
...
...
@@ -816,27 +827,27 @@ class VM_Linker(link.LocalLinker):
c0
=
sys
.
getrefcount
(
node_n_inputs
)
vm
=
CVM
(
nodes
,
thunks
,
pre_call_clear
,
allow_gc
=
self
.
allow_gc
,
call_counts
=
[
0
]
*
len
(
nodes
),
call_times
=
[
0.0
]
*
len
(
nodes
),
compute_map_list
=
compute_map_list
,
storage_map_list
=
storage_map_list
,
base_input_output_list
=
base_input_output_list
,
node_n_inputs
=
node_n_inputs
,
node_n_outputs
=
node_n_outputs
,
node_input_offset
=
node_input_offset
,
node_output_offset
=
node_output_offset
,
var_owner
=
var_owner
,
is_lazy_list
=
is_lazy_list
,
output_vars
=
output_vars
,
node_prereqs
=
node_prereqs
,
node_output_size
=
node_output_size
,
update_storage
=
update_storage
,
dependencies
=
dependency_map_list
,
)
nodes
,
thunks
,
pre_call_clear
,
allow_gc
=
self
.
allow_gc
,
call_counts
=
[
0
]
*
len
(
nodes
),
call_times
=
[
0.0
]
*
len
(
nodes
),
compute_map_list
=
compute_map_list
,
storage_map_list
=
storage_map_list
,
base_input_output_list
=
base_input_output_list
,
node_n_inputs
=
node_n_inputs
,
node_n_outputs
=
node_n_outputs
,
node_input_offset
=
node_input_offset
,
node_output_offset
=
node_output_offset
,
var_owner
=
var_owner
,
is_lazy_list
=
is_lazy_list
,
output_vars
=
output_vars
,
node_prereqs
=
node_prereqs
,
node_output_size
=
node_output_size
,
update_storage
=
update_storage
,
dependencies
=
dependency_map_list
,
)
assert
c0
==
sys
.
getrefcount
(
node_n_inputs
)
else
:
lazy
=
self
.
lazy
...
...
@@ -848,36 +859,36 @@ class VM_Linker(link.LocalLinker):
# there is no conditional in the graph
if
self
.
allow_gc
:
vm
=
LoopGC
(
nodes
,
thunks
,
pre_call_clear
,
post_thunk_clear
)
nodes
,
thunks
,
pre_call_clear
,
post_thunk_clear
)
else
:
vm
=
Loop
(
nodes
,
thunks
,
pre_call_clear
)
nodes
,
thunks
,
pre_call_clear
)
else
:
deps
=
None
if
self
.
allow_gc
:
deps
=
self
.
compute_gc_dependencies
(
storage_map
)
vm
=
Stack
(
nodes
,
thunks
,
pre_call_clear
,
storage_map
,
compute_map
,
self
.
fgraph
,
self
.
allow_gc
,
dependencies
=
deps
)
nodes
,
thunks
,
pre_call_clear
,
storage_map
,
compute_map
,
self
.
fgraph
,
self
.
allow_gc
,
dependencies
=
deps
)
return
vm
def
make_all
(
self
,
profiler
=
None
,
input_storage
=
None
,
output_storage
=
None
,
):
):
fgraph
=
self
.
fgraph
order
=
self
.
schedule
(
fgraph
)
no_recycling
=
self
.
no_recycling
input_storage
,
output_storage
,
storage_map
=
link
.
map_storage
(
fgraph
,
order
,
input_storage
,
output_storage
)
fgraph
,
order
,
input_storage
,
output_storage
)
compute_map
=
{}
for
k
in
storage_map
:
compute_map
[
k
]
=
[
k
.
owner
is
None
]
...
...
@@ -917,12 +928,12 @@ class VM_Linker(link.LocalLinker):
post_thunk_clear
=
None
vm
=
self
.
make_vm
(
order
,
thunks
,
input_storage
,
output_storage
,
storage_map
,
post_thunk_clear
,
computed
,
compute_map
,
self
.
updated_vars
)
input_storage
,
output_storage
,
storage_map
,
post_thunk_clear
,
computed
,
compute_map
,
self
.
updated_vars
)
vm
.
storage_map
=
storage_map
...
...
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