Make sure the buildbots also have the proper MKL setting.

.jenkins/jenkins_buildbot_python2.sh

@@ -2,6 +2,7 @@
 
 BUILDBOT_DIR=$WORKSPACE/nightly_build
 THEANO_PARAM="theano --with-timer --timer-top-n 10"
+export MKL_THREADING_LAYER=GNU
 export THEANO_FLAGS=init_gpu_device=cuda
 
 # CUDA

.jenkins/jenkins_buildbot_python2_32bit.sh

@@ -2,6 +2,8 @@
 
 BUILDBOT_DIR=$WORKSPACE/nightly_build
 THEANO_PARAM="theano --with-timer --timer-top-n 10"
+
+export MKL_THREADING_LAYER=GNU
 # Set test reports using nosetests xunit
 XUNIT="--with-xunit --xunit-file="
 SUITE="--xunit-testsuite-name="

.jenkins/jenkins_buildbot_python2_debug.sh

@@ -2,6 +2,7 @@
 
 BUILDBOT_DIR=$WORKSPACE/nightly_build
 THEANO_PARAM="theano --with-timer --timer-top-n 10 -v"
+export MKL_THREADING_LAYER=GNU
 export THEANO_FLAGS=init_gpu_device=cuda
 
 # CUDA

.jenkins/jenkins_buildbot_python3.sh

@@ -3,6 +3,8 @@
 BUILDBOT_DIR=$WORKSPACE/nightly_build
 THEANO_PARAM="theano --with-timer --timer-top-n 10"
 COMPILEDIR=$HOME/.theano/buildbot_theano_python3
+export MKL_THREADING_LAYER=GNU
+
 # Set test reports using nosetests xunit
 XUNIT="--with-xunit --xunit-file="
 SUITE="--xunit-testsuite-name="

.jenkins/jenkins_buildbot_release_extra.sh

@@ -2,6 +2,7 @@
 
 BUILDBOT_DIR=$WORKSPACE/nightly_build
 THEANO_PARAM="theano --with-timer --timer-top-n 10"
+export MKL_THREADING_LAYER=GNU
 export THEANO_FLAGS=init_gpu_device=cuda
 
 # CUDA