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pytensor
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426686fe
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426686fe
authored
6月 12, 2013
作者:
ebuchman
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Merge pull request #1 from nouiz/ebuchman-chi2sf/master
Finish chi2 tests and GPU code.
上级
08d16c0a
914eb1be
隐藏空白字符变更
内嵌
并排
正在显示
2 个修改的文件
包含
107 行增加
和
93 行删除
+107
-93
basic_scipy.py
theano/scalar/basic_scipy.py
+57
-55
test_basic.py
theano/tensor/tests/test_basic.py
+50
-38
没有找到文件。
theano/scalar/basic_scipy.py
浏览文件 @
426686fe
...
@@ -289,20 +289,23 @@ DEVICE double _psi(double x){
...
@@ -289,20 +289,23 @@ DEVICE double _psi(double x){
return
hash
(
type
(
self
))
return
hash
(
type
(
self
))
psi
=
Psi
(
upgrade_to_float
,
name
=
'psi'
)
psi
=
Psi
(
upgrade_to_float
,
name
=
'psi'
)
class
Chi2SF
(
BinaryScalarOp
):
class
Chi2SF
(
BinaryScalarOp
):
"""
"""
Compute (1 - chi2_cdf(x))
Compute (1 - chi2_cdf(x))
ie. chi2 pvalue (chi2 'survival function')
ie. chi2 pvalue (chi2 'survival function')
"""
"""
@staticmethod
@staticmethod
def
st_impl
(
x
,
k
):
def
st_impl
(
x
,
k
):
return
scipy
.
stats
.
chi2
.
sf
(
x
,
k
)
return
scipy
.
stats
.
chi2
.
sf
(
x
,
k
)
def
impl
(
self
,
x
,
k
):
def
impl
(
self
,
x
,
k
):
if
imported_scipy_special
:
if
imported_scipy_special
:
return
Chi2SF
.
st_impl
(
x
,
k
)
return
Chi2SF
.
st_impl
(
x
,
k
)
else
:
else
:
super
(
Chi2SF
,
self
)
.
impl
(
x
,
k
)
super
(
Chi2SF
,
self
)
.
impl
(
x
,
k
)
def
c_support_code
(
self
):
def
c_support_code
(
self
):
return
(
return
(
"""
"""
...
@@ -312,10 +315,10 @@ class Chi2SF(BinaryScalarOp):
...
@@ -312,10 +315,10 @@ class Chi2SF(BinaryScalarOp):
#else
#else
#define DEVICE
#define DEVICE
#endif
#endif
#ifndef _CHI2FUNCDEFINED
#ifndef _CHI2FUNCDEFINED
#define _CHI2FUNCDEFINED
#define _CHI2FUNCDEFINED
/*----------------------------------------------------------------------
/*----------------------------------------------------------------------
File : gamma.c
File : gamma.c
Contents: computation of the (incomplete/regularized) gamma function
Contents: computation of the (incomplete/regularized) gamma function
...
@@ -328,8 +331,8 @@ class Chi2SF(BinaryScalarOp):
...
@@ -328,8 +331,8 @@ class Chi2SF(BinaryScalarOp):
----------------------------------------------------------------------*/
----------------------------------------------------------------------*/
#include <stdio.h>
#include <stdio.h>
#include <stdlib.h>
#include <stdlib.h>
#include <assert.h>
#include <assert.h>
#include <float.h>
#include <float.h>
#include <math.h>
#include <math.h>
...
@@ -346,23 +349,23 @@ class Chi2SF(BinaryScalarOp):
...
@@ -346,23 +349,23 @@ class Chi2SF(BinaryScalarOp):
#define MAXFACT 170
#define MAXFACT 170
#define MAXITER 1024
#define MAXITER 1024
#define TINY (EPSILON *EPSILON *EPSILON)
#define TINY (EPSILON *EPSILON *EPSILON)
/*----------------------------------------------------------------------
/*----------------------------------------------------------------------
Table of Factorials/Gamma Values
Table of Factorials/Gamma Values
----------------------------------------------------------------------*/
----------------------------------------------------------------------*/
static double _facts[MAXFACT+1] = { 0 };
DEVICE
static double _facts[MAXFACT+1] = { 0 };
static double _logfs[MAXFACT+1];
DEVICE
static double _logfs[MAXFACT+1];
static double _halfs[MAXFACT+1];
DEVICE
static double _halfs[MAXFACT+1];
static double _loghs[MAXFACT+1];
DEVICE
static double _loghs[MAXFACT+1];
/*----------------------------------------------------------------------
/*----------------------------------------------------------------------
Functions
Functions
----------------------------------------------------------------------*/
----------------------------------------------------------------------*/
static void _init (void)
DEVICE
static void _init (void)
{ /* --- init. factorial tables */
{ /* --- init. factorial tables */
int i; /* loop variable */
int i; /* loop variable */
double x = 1; /* factorial */
double x = 1; /* factorial */
_facts[0] = _facts[1] = 1; /* store factorials for 0 and 1 */
_facts[0] = _facts[1] = 1; /* store factorials for 0 and 1 */
_logfs[0] = _logfs[1] = 0; /* and their logarithms */
_logfs[0] = _logfs[1] = 0; /* and their logarithms */
for (i = 1; ++i <= MAXFACT; ) {
for (i = 1; ++i <= MAXFACT; ) {
...
@@ -376,14 +379,14 @@ class Chi2SF(BinaryScalarOp):
...
@@ -376,14 +379,14 @@ class Chi2SF(BinaryScalarOp):
_loghs[i] = log(x); /* the Gamma function of half numbers */
_loghs[i] = log(x); /* the Gamma function of half numbers */
} /* and the table of their logarithms */
} /* and the table of their logarithms */
} /* _init() */
} /* _init() */
/*--------------------------------------------------------------------*/
/*--------------------------------------------------------------------*/
#if 0
#if 0
double logGamma (double n)
double logGamma (double n)
{ /* --- compute ln(Gamma(n)) */
{ /* --- compute ln(Gamma(n)) */
double s; /* = ln((n-1)!), n
\
in IN */
double s; /* = ln((n-1)!), n
\
in IN */
assert(n > 0); /* check the function argument */
assert(n > 0); /* check the function argument */
if (_facts[0] <= 0) _init(); /* initialize the tables */
if (_facts[0] <= 0) _init(); /* initialize the tables */
if (n < MAXFACT +1 +4 *EPSILON) {
if (n < MAXFACT +1 +4 *EPSILON) {
...
@@ -401,13 +404,13 @@ class Chi2SF(BinaryScalarOp):
...
@@ -401,13 +404,13 @@ class Chi2SF(BinaryScalarOp):
- 0.5395239384953e-5 /(n+6);
- 0.5395239384953e-5 /(n+6);
return (n+0.5) *log((n+5.5)/LN_BASE) +(LN_SQRT_2PI +log(s/n) -5.0);
return (n+0.5) *log((n+5.5)/LN_BASE) +(LN_SQRT_2PI +log(s/n) -5.0);
} /* logGamma() */
} /* logGamma() */
#else /*--------------------------------------------------------------*/
#else /*--------------------------------------------------------------*/
double logGamma (double n)
DEVICE
double logGamma (double n)
{ /* --- compute ln(Gamma(n)) */
{ /* --- compute ln(Gamma(n)) */
double s; /* = ln((n-1)!), n
\
in IN */
double s; /* = ln((n-1)!), n
\
in IN */
assert(n > 0); /* check the function argument */
assert(n > 0); /* check the function argument */
if (_facts[0] <= 0) _init(); /* initialize the tables */
if (_facts[0] <= 0) _init(); /* initialize the tables */
if (n < MAXFACT +1 +4 *EPSILON) {
if (n < MAXFACT +1 +4 *EPSILON) {
...
@@ -427,7 +430,7 @@ class Chi2SF(BinaryScalarOp):
...
@@ -427,7 +430,7 @@ class Chi2SF(BinaryScalarOp):
+ 1.50563273514931155834e-7 /(n+8);
+ 1.50563273514931155834e-7 /(n+8);
return (n+0.5) *log((n+7.5)/LN_BASE) +(LN_SQRT_2PI +log(s/n) -7.0);
return (n+0.5) *log((n+7.5)/LN_BASE) +(LN_SQRT_2PI +log(s/n) -7.0);
} /* logGamma() */
} /* logGamma() */
#endif
#endif
/*----------------------------------------------------------------------
/*----------------------------------------------------------------------
Use Lanczos' approximation
Use Lanczos' approximation
...
@@ -437,20 +440,20 @@ class Chi2SF(BinaryScalarOp):
...
@@ -437,20 +440,20 @@ class Chi2SF(BinaryScalarOp):
* (c_0 +c_1/(n+1) +c_2/(n+2) +...+c_n/(n+k) +
\
epsilon)
* (c_0 +c_1/(n+1) +c_2/(n+2) +...+c_n/(n+k) +
\
epsilon)
and exploit the recursion
\
Gamma(n+1) = n *
\
Gamma(n) once,
and exploit the recursion
\
Gamma(n+1) = n *
\
Gamma(n) once,
i.e., compute
\
Gamma(n) as
\
Gamma(n+1) /n.
i.e., compute
\
Gamma(n) as
\
Gamma(n+1) /n.
For the choices
\
gamma = 5, k = 6, and c_0 to c_6 as defined
For the choices
\
gamma = 5, k = 6, and c_0 to c_6 as defined
in the first version, it is |
\
epsilon| < 2e-10 for all n > 0.
in the first version, it is |
\
epsilon| < 2e-10 for all n > 0.
Source: W.H. Press, S.A. Teukolsky, W.T. Vetterling, and B.P. Flannery
Source: W.H. Press, S.A. Teukolsky, W.T. Vetterling, and B.P. Flannery
Numerical Recipes in C - The Art of Scientific Computing
Numerical Recipes in C - The Art of Scientific Computing
Cambridge University Press, Cambridge, United Kingdom 1992
Cambridge University Press, Cambridge, United Kingdom 1992
pp. 213-214
pp. 213-214
For the choices gamma = 7, k = 8, and c_0 to c_8 as defined
For the choices gamma = 7, k = 8, and c_0 to c_8 as defined
in the second version, the value is slightly more accurate.
in the second version, the value is slightly more accurate.
----------------------------------------------------------------------*/
----------------------------------------------------------------------*/
double Gamma (double n)
DEVICE
double Gamma (double n)
{ /* --- compute Gamma(n) = (n-1)! */
{ /* --- compute Gamma(n) = (n-1)! */
assert(n > 0); /* check the function argument */
assert(n > 0); /* check the function argument */
if (_facts[0] <= 0) _init(); /* initialize the tables */
if (_facts[0] <= 0) _init(); /* initialize the tables */
...
@@ -462,14 +465,14 @@ class Chi2SF(BinaryScalarOp):
...
@@ -462,14 +465,14 @@ class Chi2SF(BinaryScalarOp):
} /* try to get the value from a table */
} /* try to get the value from a table */
return exp(logGamma(n)); /* compute through natural logarithm */
return exp(logGamma(n)); /* compute through natural logarithm */
} /* Gamma() */
} /* Gamma() */
/*--------------------------------------------------------------------*/
/*--------------------------------------------------------------------*/
static double _series (double n, double x)
DEVICE
static double _series (double n, double x)
{ /* --- series approximation */
{ /* --- series approximation */
int i; /* loop variable */
int i; /* loop variable */
double t, sum; /* buffers */
double t, sum; /* buffers */
sum = t = 1/n; /* compute initial values */
sum = t = 1/n; /* compute initial values */
for (i = MAXITER; --i >= 0; ) {
for (i = MAXITER; --i >= 0; ) {
sum += t *= x/++n; /* add one term of the series */
sum += t *= x/++n; /* add one term of the series */
...
@@ -477,25 +480,25 @@ class Chi2SF(BinaryScalarOp):
...
@@ -477,25 +480,25 @@ class Chi2SF(BinaryScalarOp):
} /* if term is small enough, abort */
} /* if term is small enough, abort */
return sum; /* return the computed factor */
return sum; /* return the computed factor */
} /* _series() */
} /* _series() */
/*----------------------------------------------------------------------
/*----------------------------------------------------------------------
series approximation:
series approximation:
P(a,x) =
\
gamma(a,x)/
\
Gamma(a)
P(a,x) =
\
gamma(a,x)/
\
Gamma(a)
\
gamma(a,x) = e^-x x^a
\
sum_{n=0}^
\
infty (
\
Gamma(a)/
\
Gamma(a+1+n)) x^n
\
gamma(a,x) = e^-x x^a
\
sum_{n=0}^
\
infty (
\
Gamma(a)/
\
Gamma(a+1+n)) x^n
Source: W.H. Press, S.A. Teukolsky, W.T. Vetterling, and B.P. Flannery
Source: W.H. Press, S.A. Teukolsky, W.T. Vetterling, and B.P. Flannery
Numerical Recipes in C - The Art of Scientific Computing
Numerical Recipes in C - The Art of Scientific Computing
Cambridge University Press, Cambridge, United Kingdom 1992
Cambridge University Press, Cambridge, United Kingdom 1992
formula: pp. 216-219
formula: pp. 216-219
The factor exp(n *log(x) -x) is added in the functions below.
The factor exp(n *log(x) -x) is added in the functions below.
----------------------------------------------------------------------*/
----------------------------------------------------------------------*/
static double _cfrac (double n, double x)
DEVICE
static double _cfrac (double n, double x)
{ /* --- continued fraction approx. */
{ /* --- continued fraction approx. */
int i; /* loop variable */
int i; /* loop variable */
double a, b, c, d, e, f; /* buffers */
double a, b, c, d, e, f; /* buffers */
b = x+1-n; c = 1/TINY; f = d = 1/b;
b = x+1-n; c = 1/TINY; f = d = 1/b;
for (i = 1; i < MAXITER; i++) {
for (i = 1; i < MAXITER; i++) {
a = i*(n-i); /* use Lentz's algorithm to compute */
a = i*(n-i); /* use Lentz's algorithm to compute */
...
@@ -508,68 +511,67 @@ class Chi2SF(BinaryScalarOp):
...
@@ -508,68 +511,67 @@ class Chi2SF(BinaryScalarOp):
} /* if factor is small enough, abort */
} /* if factor is small enough, abort */
return f; /* return the computed factor */
return f; /* return the computed factor */
} /* _cfrac() */
} /* _cfrac() */
/*----------------------------------------------------------------------
/*----------------------------------------------------------------------
continued fraction approximation:
continued fraction approximation:
P(a,x) = 1 -
\
Gamma(a,x)/
\
Gamma(a)
P(a,x) = 1 -
\
Gamma(a,x)/
\
Gamma(a)
\
Gamma(a,x) = e^-x x^a (1/(x+1-a- 1(1-a)/(x+3-a- 2*(2-a)/(x+5-a- ...))))
\
Gamma(a,x) = e^-x x^a (1/(x+1-a- 1(1-a)/(x+3-a- 2*(2-a)/(x+5-a- ...))))
Source: W.H. Press, S.A. Teukolsky, W.T. Vetterling, and B.P. Flannery
Source: W.H. Press, S.A. Teukolsky, W.T. Vetterling, and B.P. Flannery
Numerical Recipes in C - The Art of Scientific Computing
Numerical Recipes in C - The Art of Scientific Computing
Cambridge University Press, Cambridge, United Kingdom 1992
Cambridge University Press, Cambridge, United Kingdom 1992
formula: pp. 216-219
formula: pp. 216-219
Lentz's algorithm: p. 171
Lentz's algorithm: p. 171
The factor exp(n *log(x) -x) is added in the functions below.
The factor exp(n *log(x) -x) is added in the functions below.
----------------------------------------------------------------------*/
----------------------------------------------------------------------*/
double lowerGamma (double n, double x)
DEVICE
double lowerGamma (double n, double x)
{ /* --- lower incomplete Gamma fn. */
{ /* --- lower incomplete Gamma fn. */
assert((n > 0) && (x > 0)); /* check the function arguments */
assert((n > 0) && (x > 0)); /* check the function arguments */
return _series(n, x) *exp(n *log(x) -x);
return _series(n, x) *exp(n *log(x) -x);
} /* lowerGamma() */
} /* lowerGamma() */
/*--------------------------------------------------------------------*/
/*--------------------------------------------------------------------*/
double upperGamma (double n, double x)
DEVICE
double upperGamma (double n, double x)
{ /* --- upper incomplete Gamma fn. */
{ /* --- upper incomplete Gamma fn. */
assert((n > 0) && (x > 0)); /* check the function arguments */
assert((n > 0) && (x > 0)); /* check the function arguments */
return _cfrac(n, x) *exp(n *log(x) -x);
return _cfrac(n, x) *exp(n *log(x) -x);
} /* upperGamma() */
} /* upperGamma() */
/*--------------------------------------------------------------------*/
/*--------------------------------------------------------------------*/
DEVICE double GammaP (double n, double x)
double GammaP (double n, double x)
{ /* --- regularized Gamma function P */
{ /* --- regularized Gamma function P */
assert((n > 0) && (x >= 0)); /* check the function arguments */
assert((n > 0) && (x >= 0)); /* check the function arguments */
if (x <= 0) return 0; /* treat x = 0 as a special case */
if (x <= 0) return 0; /* treat x = 0 as a special case */
if (x < n+1) return _series(n, x) *exp(n *log(x) -x -logGamma(n));
if (x < n+1) return _series(n, x) *exp(n *log(x) -x -logGamma(n));
return 1 -_cfrac(n, x) *exp(n *log(x) -x -logGamma(n));
return 1 -_cfrac(n, x) *exp(n *log(x) -x -logGamma(n));
} /* GammaP() */
} /* GammaP() */
//ebuchman: this function is equivalent to scipy.stats.chi2.sf
//ebuchman: this function is equivalent to scipy.stats.chi2.sf
//it's the pvalue (survival function) of a chi2 distribution
//it's the pvalue (survival function) of a chi2 distribution
DEVICE double Chi2SF (double k, double x)
DEVICE double Chi2SF (double k, double x)
{
{
return 1 - GammaP(k/2., x/2.);
return 1 - GammaP(k/2., x/2.);
}
}
#endif
"""
)
"""
)
def
c_code
(
self
,
node
,
name
,
inp
,
out
,
sub
):
def
c_code
(
self
,
node
,
name
,
inp
,
out
,
sub
):
x
,
k
=
inp
x
,
k
=
inp
z
,
=
out
z
,
=
out
if
node
.
inputs
[
0
]
.
type
in
float_types
:
if
node
.
inputs
[
0
]
.
type
in
float_types
:
dtype
=
z
.
dtype
dtype
=
'npy_'
+
node
.
outputs
[
0
]
.
dtype
return
"""
%(z)
s =
return
"""
%(z)
s =
(
%(dtype)
s)Chi2SF(
%(k)
s,
%(x)
s);"""
%
locals
()
(
%(dtype)
s)Chi2SF(
%(k)
s,
%(x)
s);"""
%
locals
()
raise
NotImplementedError
(
'only floatingpoint is implemented'
)
raise
NotImplementedError
(
'only floatingpoint is implemented'
)
def
__eq__
(
self
,
other
):
def
__eq__
(
self
,
other
):
return
type
(
self
)
==
type
(
other
)
return
type
(
self
)
==
type
(
other
)
def
__hash__
(
self
):
def
__hash__
(
self
):
return
hash
(
type
(
self
))
return
hash
(
type
(
self
))
...
...
theano/tensor/tests/test_basic.py
浏览文件 @
426686fe
...
@@ -69,14 +69,15 @@ utt.seed_rng()
...
@@ -69,14 +69,15 @@ utt.seed_rng()
def
inplace_func
(
inputs
,
outputs
,
mode
=
None
,
allow_input_downcast
=
False
,
def
inplace_func
(
inputs
,
outputs
,
mode
=
None
,
allow_input_downcast
=
False
,
on_unused_input
=
'raise'
):
on_unused_input
=
'raise'
,
name
=
None
):
if
mode
is
None
:
if
mode
is
None
:
mode
=
get_default_mode
()
mode
=
get_default_mode
()
return
function
(
inputs
,
outputs
,
return
function
(
inputs
,
outputs
,
mode
=
mode
,
mode
=
mode
,
allow_input_downcast
=
allow_input_downcast
,
allow_input_downcast
=
allow_input_downcast
,
accept_inplace
=
True
,
accept_inplace
=
True
,
on_unused_input
=
on_unused_input
)
on_unused_input
=
on_unused_input
,
name
=
name
)
def
eval_outputs
(
outputs
):
def
eval_outputs
(
outputs
):
...
@@ -292,7 +293,7 @@ def makeTester(name, op, expected, checks=None, good=None, bad_build=None,
...
@@ -292,7 +293,7 @@ def makeTester(name, op, expected, checks=None, good=None, bad_build=None,
raise
raise
try
:
try
:
f
=
inplace_func
(
inputrs
,
node
.
outputs
,
mode
=
mode
)
f
=
inplace_func
(
inputrs
,
node
.
outputs
,
mode
=
mode
,
name
=
'test_good'
)
except
Exception
,
exc
:
except
Exception
,
exc
:
err_msg
=
(
"Test
%
s::
%
s: Error occurred while"
err_msg
=
(
"Test
%
s::
%
s: Error occurred while"
" trying to make a Function"
)
%
(
self
.
op
,
testname
)
" trying to make a Function"
)
%
(
self
.
op
,
testname
)
...
@@ -382,7 +383,7 @@ def makeTester(name, op, expected, checks=None, good=None, bad_build=None,
...
@@ -382,7 +383,7 @@ def makeTester(name, op, expected, checks=None, good=None, bad_build=None,
raise
raise
try
:
try
:
f
=
inplace_func
([],
node
.
outputs
,
mode
=
mode
)
f
=
inplace_func
([],
node
.
outputs
,
mode
=
mode
,
name
=
"test_bad_runtime"
)
except
Exception
,
exc
:
except
Exception
,
exc
:
err_msg
=
(
"Test
%
s::
%
s: Error occurred while trying"
err_msg
=
(
"Test
%
s::
%
s: Error occurred while trying"
" to make a Function"
)
%
(
self
.
op
,
testname
)
" to make a Function"
)
%
(
self
.
op
,
testname
)
...
@@ -536,7 +537,8 @@ _good_broadcast_binary_normal = dict(
...
@@ -536,7 +537,8 @@ _good_broadcast_binary_normal = dict(
# Disabled as we test the case where we reuse the same output as the
# Disabled as we test the case where we reuse the same output as the
# first inputs.
# first inputs.
# complex3=(rand(2,3),randcomplex(2,3)),
# complex3=(rand(2,3),randcomplex(2,3)),
empty
=
(
numpy
.
asarray
([]),
numpy
.
asarray
([
1
])),
empty
=
(
numpy
.
asarray
([],
dtype
=
config
.
floatX
),
numpy
.
asarray
([
1
],
dtype
=
config
.
floatX
)),
)
)
_bad_build_broadcast_binary_normal
=
dict
()
_bad_build_broadcast_binary_normal
=
dict
()
...
@@ -740,7 +742,8 @@ if PY3:
...
@@ -740,7 +742,8 @@ if PY3:
else
:
else
:
_good_broadcast_div_mod_normal_float_inplace
=
copymod
(
_good_broadcast_div_mod_normal_float_inplace
=
copymod
(
_good_broadcast_div_mod_normal_float_no_complex
,
_good_broadcast_div_mod_normal_float_no_complex
,
empty1
=
(
numpy
.
asarray
([]),
numpy
.
asarray
([
1
])),
empty1
=
(
numpy
.
asarray
([],
dtype
=
config
.
floatX
),
numpy
.
asarray
([
1
],
dtype
=
config
.
floatX
)),
complex1
=
(
randcomplex
(
2
,
3
),
randcomplex_nonzero
((
2
,
3
))),
complex1
=
(
randcomplex
(
2
,
3
),
randcomplex_nonzero
((
2
,
3
))),
complex2
=
(
randcomplex
(
2
,
3
),
rand_nonzero
((
2
,
3
))),
complex2
=
(
randcomplex
(
2
,
3
),
rand_nonzero
((
2
,
3
))),
# Inplace on the first element. Must have the same type.
# Inplace on the first element. Must have the same type.
...
@@ -749,7 +752,8 @@ else:
...
@@ -749,7 +752,8 @@ else:
_good_broadcast_div_mod_normal_float
=
copymod
(
_good_broadcast_div_mod_normal_float
=
copymod
(
_good_broadcast_div_mod_normal_float_inplace
,
_good_broadcast_div_mod_normal_float_inplace
,
empty2
=
(
numpy
.
asarray
([
0
]),
numpy
.
asarray
([]))
empty2
=
(
numpy
.
asarray
([
0
],
dtype
=
config
.
floatX
),
numpy
.
asarray
([],
dtype
=
config
.
floatX
))
)
)
...
@@ -842,8 +846,13 @@ _good_broadcast_pow_normal_float = dict(same_shapes = (rand_ranged(1, 5, (2, 3))
...
@@ -842,8 +846,13 @@ _good_broadcast_pow_normal_float = dict(same_shapes = (rand_ranged(1, 5, (2, 3))
complex1
=
(
randcomplex
(
2
,
3
),
randcomplex
(
2
,
3
)),
complex1
=
(
randcomplex
(
2
,
3
),
randcomplex
(
2
,
3
)),
complex2
=
(
randcomplex
(
2
,
3
),
rand
(
2
,
3
)),
complex2
=
(
randcomplex
(
2
,
3
),
rand
(
2
,
3
)),
#complex3 = (rand(2,3),randcomplex(2,3)), # Inplace on the first element.
#complex3 = (rand(2,3),randcomplex(2,3)), # Inplace on the first element.
empty1
=
(
numpy
.
asarray
([]),
numpy
.
asarray
([
1
])),
empty1
=
(
numpy
.
asarray
([],
dtype
=
config
.
floatX
),
empty2
=
(
numpy
.
asarray
([
0
]),
numpy
.
asarray
([])),)
numpy
.
asarray
([
1
],
dtype
=
config
.
floatX
)),
empty2
=
(
numpy
.
asarray
([
0
],
dtype
=
config
.
floatX
),
numpy
.
asarray
([],
dtype
=
config
.
floatX
)),
empty3
=
(
numpy
.
asarray
([],
dtype
=
config
.
floatX
),
numpy
.
asarray
([],
dtype
=
config
.
floatX
)),
)
_grad_broadcast_pow_normal
=
dict
(
same_shapes
=
(
rand_ranged
(
1
,
5
,
(
2
,
3
)),
rand_ranged
(
-
3
,
3
,
(
2
,
3
))),
_grad_broadcast_pow_normal
=
dict
(
same_shapes
=
(
rand_ranged
(
1
,
5
,
(
2
,
3
)),
rand_ranged
(
-
3
,
3
,
(
2
,
3
))),
scalar
=
(
rand_ranged
(
1
,
5
,
(
2
,
3
)),
rand_ranged
(
-
3
,
3
,
(
1
,
1
))),
scalar
=
(
rand_ranged
(
1
,
5
,
(
2
,
3
)),
rand_ranged
(
-
3
,
3
,
(
1
,
1
))),
row
=
(
row
=
(
...
@@ -889,7 +898,7 @@ _good_broadcast_unary_normal_float = dict(
...
@@ -889,7 +898,7 @@ _good_broadcast_unary_normal_float = dict(
normal
=
[
rand_ranged
(
-
5
,
5
,
(
2
,
3
))],
normal
=
[
rand_ranged
(
-
5
,
5
,
(
2
,
3
))],
corner_case
=
[
corner_case
],
corner_case
=
[
corner_case
],
complex
=
[
randcomplex
(
2
,
3
)],
complex
=
[
randcomplex
(
2
,
3
)],
empty
=
[
numpy
.
asarray
([])])
empty
=
[
numpy
.
asarray
([]
,
dtype
=
config
.
floatX
)])
_good_broadcast_unary_normal_float_no_empty
=
copymod
(
_good_broadcast_unary_normal_float_no_empty
=
copymod
(
_good_broadcast_unary_normal_float
,
_good_broadcast_unary_normal_float
,
...
@@ -909,14 +918,14 @@ _good_broadcast_unary_normal = dict(
...
@@ -909,14 +918,14 @@ _good_broadcast_unary_normal = dict(
integers
=
[
randint_ranged
(
-
5
,
5
,
(
2
,
3
))],
integers
=
[
randint_ranged
(
-
5
,
5
,
(
2
,
3
))],
corner_case
=
[
corner_case
],
corner_case
=
[
corner_case
],
complex
=
[
randcomplex
(
2
,
3
)],
complex
=
[
randcomplex
(
2
,
3
)],
empty
=
[
numpy
.
asarray
([])],
empty
=
[
numpy
.
asarray
([]
,
dtype
=
config
.
floatX
)],
)
)
_good_broadcast_unary_normal_no_complex
=
dict
(
_good_broadcast_unary_normal_no_complex
=
dict
(
normal
=
[
numpy
.
asarray
(
rand_ranged
(
-
5
,
5
,
(
2
,
3
)),
dtype
=
floatX
)],
normal
=
[
numpy
.
asarray
(
rand_ranged
(
-
5
,
5
,
(
2
,
3
)),
dtype
=
floatX
)],
integers
=
[
randint_ranged
(
-
5
,
5
,
(
2
,
3
))],
integers
=
[
randint_ranged
(
-
5
,
5
,
(
2
,
3
))],
corner_case
=
[
corner_case
],
corner_case
=
[
corner_case
],
empty
=
[
numpy
.
asarray
([])],
empty
=
[
numpy
.
asarray
([]
,
dtype
=
config
.
floatX
)],
)
)
_grad_broadcast_unary_normal_no_complex
=
dict
(
_grad_broadcast_unary_normal_no_complex
=
dict
(
...
@@ -1123,7 +1132,7 @@ Expm1InplaceTester = makeBroadcastTester(op=inplace.expm1_inplace,
...
@@ -1123,7 +1132,7 @@ Expm1InplaceTester = makeBroadcastTester(op=inplace.expm1_inplace,
_good_broadcast_unary_positive
=
dict
(
normal
=
(
rand_ranged
(
0.001
,
5
,
(
2
,
3
)),),
_good_broadcast_unary_positive
=
dict
(
normal
=
(
rand_ranged
(
0.001
,
5
,
(
2
,
3
)),),
integers
=
(
randint_ranged
(
1
,
5
,
(
2
,
3
)),),
integers
=
(
randint_ranged
(
1
,
5
,
(
2
,
3
)),),
complex
=
(
randc128_ranged
(
1
,
5
,
(
2
,
3
)),),
complex
=
(
randc128_ranged
(
1
,
5
,
(
2
,
3
)),),
empty
=
(
numpy
.
asarray
([]),),
empty
=
(
numpy
.
asarray
([]
,
dtype
=
config
.
floatX
),),
)
)
_grad_broadcast_unary_positive
=
dict
(
normal
=
(
rand_ranged
(
0.001
,
5
,
(
2
,
3
)),),)
_grad_broadcast_unary_positive
=
dict
(
normal
=
(
rand_ranged
(
0.001
,
5
,
(
2
,
3
)),),)
...
@@ -1182,7 +1191,7 @@ _good_broadcast_unary_wide = dict(
...
@@ -1182,7 +1191,7 @@ _good_broadcast_unary_wide = dict(
normal
=
(
rand_ranged
(
-
1000
,
1000
,
(
2
,
3
)),),
normal
=
(
rand_ranged
(
-
1000
,
1000
,
(
2
,
3
)),),
integers
=
(
randint_ranged
(
-
1000
,
1000
,
(
2
,
3
)),),
integers
=
(
randint_ranged
(
-
1000
,
1000
,
(
2
,
3
)),),
complex
=
(
randc128_ranged
(
-
1000
,
1000
,
(
2
,
3
)),),
complex
=
(
randc128_ranged
(
-
1000
,
1000
,
(
2
,
3
)),),
empty
=
(
numpy
.
asarray
([]),),)
empty
=
(
numpy
.
asarray
([]
,
dtype
=
config
.
floatX
),),)
_grad_broadcast_unary_wide
=
dict
(
normal
=
(
rand_ranged
(
-
1000
,
1000
,
(
2
,
3
)),),)
_grad_broadcast_unary_wide
=
dict
(
normal
=
(
rand_ranged
(
-
1000
,
1000
,
(
2
,
3
)),),)
if
theano
.
config
.
floatX
==
'float32'
:
if
theano
.
config
.
floatX
==
'float32'
:
...
@@ -1231,7 +1240,7 @@ SinInplaceTester = makeBroadcastTester(op=inplace.sin_inplace,
...
@@ -1231,7 +1240,7 @@ SinInplaceTester = makeBroadcastTester(op=inplace.sin_inplace,
_good_broadcast_unary_arcsin
=
dict
(
normal
=
(
rand_ranged
(
-
1
,
1
,
(
2
,
3
)),),
_good_broadcast_unary_arcsin
=
dict
(
normal
=
(
rand_ranged
(
-
1
,
1
,
(
2
,
3
)),),
integers
=
(
randint_ranged
(
-
1
,
1
,
(
2
,
3
)),),
integers
=
(
randint_ranged
(
-
1
,
1
,
(
2
,
3
)),),
complex
=
(
randc128_ranged
(
-
1
,
1
,
(
2
,
3
)),),
complex
=
(
randc128_ranged
(
-
1
,
1
,
(
2
,
3
)),),
empty
=
(
numpy
.
asarray
([]),),)
empty
=
(
numpy
.
asarray
([]
,
dtype
=
config
.
floatX
),),)
_grad_broadcast_unary_arcsin
=
dict
(
normal
=
(
rand_ranged
(
-
1
,
1
,
(
2
,
3
)),),)
_grad_broadcast_unary_arcsin
=
dict
(
normal
=
(
rand_ranged
(
-
1
,
1
,
(
2
,
3
)),),)
ArcsinTester
=
makeBroadcastTester
(
op
=
tensor
.
arcsin
,
ArcsinTester
=
makeBroadcastTester
(
op
=
tensor
.
arcsin
,
...
@@ -1269,7 +1278,7 @@ _good_broadcast_unary_tan = dict(
...
@@ -1269,7 +1278,7 @@ _good_broadcast_unary_tan = dict(
shifted
=
(
rand_ranged
(
3.15
,
6.28
,
(
2
,
3
)),),
shifted
=
(
rand_ranged
(
3.15
,
6.28
,
(
2
,
3
)),),
integers
=
(
randint_ranged
(
-
3
,
3
,
(
2
,
3
)),),
integers
=
(
randint_ranged
(
-
3
,
3
,
(
2
,
3
)),),
complex
=
(
randc128_ranged
(
-
3.14
,
3.14
,
(
2
,
3
)),),
complex
=
(
randc128_ranged
(
-
3.14
,
3.14
,
(
2
,
3
)),),
empty
=
(
numpy
.
asarray
([]),),)
empty
=
(
numpy
.
asarray
([]
,
dtype
=
config
.
floatX
),),)
#We do not want to test around the discontinuity.
#We do not want to test around the discontinuity.
_grad_broadcast_unary_tan
=
dict
(
normal
=
(
rand_ranged
(
-
1.5
,
1.5
,
(
2
,
3
)),),
_grad_broadcast_unary_tan
=
dict
(
normal
=
(
rand_ranged
(
-
1.5
,
1.5
,
(
2
,
3
)),),
shifted
=
(
rand_ranged
(
1.6
,
4.6
,
(
2
,
3
)),))
shifted
=
(
rand_ranged
(
1.6
,
4.6
,
(
2
,
3
)),))
...
@@ -1304,7 +1313,8 @@ _good_broadcast_binary_arctan2 = dict(
...
@@ -1304,7 +1313,8 @@ _good_broadcast_binary_arctan2 = dict(
integers
=
(
randint
(
2
,
3
),
randint
(
2
,
3
)),
integers
=
(
randint
(
2
,
3
),
randint
(
2
,
3
)),
dtype_mixup_1
=
(
rand
(
2
,
3
),
randint
(
2
,
3
)),
dtype_mixup_1
=
(
rand
(
2
,
3
),
randint
(
2
,
3
)),
dtype_mixup_2
=
(
randint
(
2
,
3
),
rand
(
2
,
3
)),
dtype_mixup_2
=
(
randint
(
2
,
3
),
rand
(
2
,
3
)),
empty
=
(
numpy
.
asarray
([]),
numpy
.
asarray
([
1
])),
empty
=
(
numpy
.
asarray
([],
dtype
=
config
.
floatX
),
numpy
.
asarray
([
1
],
dtype
=
config
.
floatX
)),
)
)
_grad_broadcast_binary_arctan2
=
dict
(
_grad_broadcast_binary_arctan2
=
dict
(
...
@@ -1338,7 +1348,7 @@ _good_broadcast_unary_arccosh = dict(
...
@@ -1338,7 +1348,7 @@ _good_broadcast_unary_arccosh = dict(
normal
=
(
rand_ranged
(
1
,
1000
,
(
2
,
3
)),),
normal
=
(
rand_ranged
(
1
,
1000
,
(
2
,
3
)),),
integers
=
(
randint_ranged
(
1
,
1000
,
(
2
,
3
)),),
integers
=
(
randint_ranged
(
1
,
1000
,
(
2
,
3
)),),
complex
=
(
randc128_ranged
(
1
,
1000
,
(
2
,
3
)),),
complex
=
(
randc128_ranged
(
1
,
1000
,
(
2
,
3
)),),
empty
=
(
numpy
.
asarray
([]),),)
empty
=
(
numpy
.
asarray
([]
,
dtype
=
config
.
floatX
),),)
_grad_broadcast_unary_arccosh
=
dict
(
normal
=
(
rand_ranged
(
1
,
1000
,
(
2
,
3
)),),)
_grad_broadcast_unary_arccosh
=
dict
(
normal
=
(
rand_ranged
(
1
,
1000
,
(
2
,
3
)),),)
ArccoshTester
=
makeBroadcastTester
(
op
=
tensor
.
arccosh
,
ArccoshTester
=
makeBroadcastTester
(
op
=
tensor
.
arccosh
,
...
@@ -1386,7 +1396,7 @@ _good_broadcast_unary_arctanh = dict(
...
@@ -1386,7 +1396,7 @@ _good_broadcast_unary_arctanh = dict(
normal
=
(
rand_ranged
(
-
1
+
_eps
,
1
-
_eps
,
(
2
,
3
)),),
normal
=
(
rand_ranged
(
-
1
+
_eps
,
1
-
_eps
,
(
2
,
3
)),),
integers
=
(
randint_ranged
(
-
1
+
_eps
,
1
-
_eps
,
(
2
,
3
)),),
integers
=
(
randint_ranged
(
-
1
+
_eps
,
1
-
_eps
,
(
2
,
3
)),),
complex
=
(
randc128_ranged
(
-
1
+
_eps
,
1
-
_eps
,
(
2
,
3
)),),
complex
=
(
randc128_ranged
(
-
1
+
_eps
,
1
-
_eps
,
(
2
,
3
)),),
empty
=
(
numpy
.
asarray
([]),),)
empty
=
(
numpy
.
asarray
([]
,
dtype
=
config
.
floatX
),),)
_grad_broadcast_unary_arctanh
=
dict
(
_grad_broadcast_unary_arctanh
=
dict
(
normal
=
(
rand_ranged
(
-
1
+
_eps
,
1
-
_eps
,
(
2
,
3
)),),)
normal
=
(
rand_ranged
(
-
1
+
_eps
,
1
-
_eps
,
(
2
,
3
)),),)
...
@@ -1420,7 +1430,7 @@ if imported_scipy_special:
...
@@ -1420,7 +1430,7 @@ if imported_scipy_special:
expected_gamma
=
scipy
.
special
.
gamma
expected_gamma
=
scipy
.
special
.
gamma
expected_gammaln
=
scipy
.
special
.
gammaln
expected_gammaln
=
scipy
.
special
.
gammaln
expected_psi
=
scipy
.
special
.
psi
expected_psi
=
scipy
.
special
.
psi
expected_chi2sf
=
scipy
.
stats
.
chi2
.
sf
expected_chi2sf
=
lambda
x
,
df
:
scipy
.
stats
.
chi2
.
sf
(
x
,
df
)
.
astype
(
x
.
dtype
)
skip_scipy
=
False
skip_scipy
=
False
else
:
else
:
expected_erf
=
[]
expected_erf
=
[]
...
@@ -1489,7 +1499,7 @@ ErfcinvTester = makeBroadcastTester(
...
@@ -1489,7 +1499,7 @@ ErfcinvTester = makeBroadcastTester(
_good_broadcast_unary_gammaln
=
dict
(
_good_broadcast_unary_gammaln
=
dict
(
normal
=
(
rand_ranged
(
-
1
+
1e-2
,
10
,
(
2
,
3
)),),
normal
=
(
rand_ranged
(
-
1
+
1e-2
,
10
,
(
2
,
3
)),),
empty
=
(
numpy
.
asarray
([]),),)
empty
=
(
numpy
.
asarray
([]
,
dtype
=
config
.
floatX
),),)
_grad_broadcast_unary_gammaln
=
dict
(
_grad_broadcast_unary_gammaln
=
dict
(
# smaller range as our grad method does not estimate it well enough.
# smaller range as our grad method does not estimate it well enough.
normal
=
(
rand_ranged
(
1e-8
,
8
,
(
2
,
3
)),),)
normal
=
(
rand_ranged
(
1e-8
,
8
,
(
2
,
3
)),),)
...
@@ -1532,7 +1542,7 @@ GammalnInplaceTester = makeBroadcastTester(
...
@@ -1532,7 +1542,7 @@ GammalnInplaceTester = makeBroadcastTester(
_good_broadcast_unary_psi
=
dict
(
_good_broadcast_unary_psi
=
dict
(
normal
=
(
rand_ranged
(
1
,
10
,
(
2
,
3
)),),
normal
=
(
rand_ranged
(
1
,
10
,
(
2
,
3
)),),
empty
=
(
numpy
.
asarray
([]),),)
empty
=
(
numpy
.
asarray
([]
,
dtype
=
config
.
floatX
),),)
PsiTester
=
makeBroadcastTester
(
PsiTester
=
makeBroadcastTester
(
op
=
tensor
.
psi
,
op
=
tensor
.
psi
,
...
@@ -1551,13 +1561,13 @@ PsiInplaceTester = makeBroadcastTester(
...
@@ -1551,13 +1561,13 @@ PsiInplaceTester = makeBroadcastTester(
skip
=
skip_scipy
)
skip
=
skip_scipy
)
'''
#chi2sf takes two inputs, a value (x) and a degrees of freedom (k).
#chi2sf takes two inputs, a value (x) and a degrees of freedom (k).
# not sure how to deal with that here...
# not sure how to deal with that here...
_good_broadcast_unary_chi2sf
=
dict
(
_good_broadcast_unary_chi2sf
=
dict
(
normal=(rand_ranged(1, 10, (2, 3)),),
normal
=
(
rand_ranged
(
1
,
10
,
(
2
,
3
)),
numpy
.
asarray
(
1
,
dtype
=
config
.
floatX
)),
empty=(numpy.asarray([]),),)
empty
=
(
numpy
.
asarray
([],
dtype
=
config
.
floatX
),
numpy
.
asarray
(
1
,
dtype
=
config
.
floatX
)))
Chi2SFTester
=
makeBroadcastTester
(
Chi2SFTester
=
makeBroadcastTester
(
op
=
tensor
.
chi2sf
,
op
=
tensor
.
chi2sf
,
...
@@ -1565,16 +1575,17 @@ Chi2SFTester = makeBroadcastTester(
...
@@ -1565,16 +1575,17 @@ Chi2SFTester = makeBroadcastTester(
good
=
_good_broadcast_unary_chi2sf
,
good
=
_good_broadcast_unary_chi2sf
,
eps
=
2e-10
,
eps
=
2e-10
,
mode
=
mode_no_scipy
,
mode
=
mode_no_scipy
,
skip=skip_scipy)
skip
=
skip_scipy
,
name
=
'Chi2SF'
)
Chi2SFInplaceTester
=
makeBroadcastTester
(
Chi2SFInplaceTester
=
makeBroadcastTester
(
op=inplace.chi2sf_inplace,
op
=
inplace
.
chi2sf_inplace
,
expected=expected_chi2sf,
expected
=
expected_chi2sf
,
good=_good_broadcast_unary_chi2sf,
good
=
_good_broadcast_unary_chi2sf
,
eps=2e-10,
eps
=
2e-10
,
mode=mode_no_scipy,
mode
=
mode_no_scipy
,
inplace=True,
inplace
=
True
,
skip=skip_scipy)
skip
=
skip_scipy
,
'''
name
=
'Chi2SF'
)
ZerosLikeTester
=
makeBroadcastTester
(
ZerosLikeTester
=
makeBroadcastTester
(
op
=
tensor
.
zeros_like
,
op
=
tensor
.
zeros_like
,
...
@@ -1598,7 +1609,8 @@ _good_complex_from_polar = dict(
...
@@ -1598,7 +1609,8 @@ _good_complex_from_polar = dict(
row
=
(
abs
(
rand
(
2
,
3
)),
rand
(
1
,
3
)),
row
=
(
abs
(
rand
(
2
,
3
)),
rand
(
1
,
3
)),
column
=
(
abs
(
rand
(
2
,
3
)),
rand
(
2
,
1
)),
column
=
(
abs
(
rand
(
2
,
3
)),
rand
(
2
,
1
)),
integers
=
(
abs
(
randint
(
2
,
3
)),
randint
(
2
,
3
)),
integers
=
(
abs
(
randint
(
2
,
3
)),
randint
(
2
,
3
)),
empty
=
(
numpy
.
asarray
([]),
numpy
.
asarray
([
1
])),)
empty
=
(
numpy
.
asarray
([],
dtype
=
config
.
floatX
),
numpy
.
asarray
([
1
],
dtype
=
config
.
floatX
)),)
_grad_complex_from_polar
=
dict
(
_grad_complex_from_polar
=
dict
(
same_shapes
=
(
abs
(
rand
(
2
,
3
)),
rand
(
2
,
3
)),
same_shapes
=
(
abs
(
rand
(
2
,
3
)),
rand
(
2
,
3
)),
scalar
=
(
abs
(
rand
(
2
,
3
)),
rand
(
1
,
1
)),
scalar
=
(
abs
(
rand
(
2
,
3
)),
rand
(
1
,
1
)),
...
@@ -1637,8 +1649,8 @@ DotTester = makeTester(name='DotTester',
...
@@ -1637,8 +1649,8 @@ DotTester = makeTester(name='DotTester',
randcomplex
(
7
)),
randcomplex
(
7
)),
complex2
=
(
rand
(
5
,
7
),
randcomplex
(
7
)),
complex2
=
(
rand
(
5
,
7
),
randcomplex
(
7
)),
complex3
=
(
randcomplex
(
5
,
7
),
rand
(
7
)),
complex3
=
(
randcomplex
(
5
,
7
),
rand
(
7
)),
empty1
=
(
numpy
.
asarray
([]),
empty1
=
(
numpy
.
asarray
([]
,
dtype
=
config
.
floatX
),
numpy
.
asarray
([])),
numpy
.
asarray
([]
,
dtype
=
config
.
floatX
)),
empty2
=
(
rand
(
5
,
0
),
rand
(
0
,
2
)),
empty2
=
(
rand
(
5
,
0
),
rand
(
0
,
2
)),
empty3
=
(
rand
(
0
,
5
),
rand
(
5
,
0
)),
empty3
=
(
rand
(
0
,
5
),
rand
(
5
,
0
)),
),
),
...
...
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