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testgroup
pytensor
Commits
3dd1f80f
提交
3dd1f80f
authored
6月 24, 2024
作者:
Ricardo Vieira
提交者:
Ricardo Vieira
6月 24, 2024
浏览文件
操作
浏览文件
下载
电子邮件补丁
差异文件
Remove useless order kwarg from Sort and add numpy 2.0 stable kwarg
上级
35f4706c
显示空白字符变更
内嵌
并排
正在显示
3 个修改的文件
包含
75 行增加
和
38 行删除
+75
-38
sort.py
pytensor/link/jax/dispatch/sort.py
+3
-1
sort.py
pytensor/tensor/sort.py
+44
-25
test_sort.py
tests/tensor/test_sort.py
+28
-12
没有找到文件。
pytensor/link/jax/dispatch/sort.py
浏览文件 @
3dd1f80f
...
@@ -6,7 +6,9 @@ from pytensor.tensor.sort import SortOp
...
@@ -6,7 +6,9 @@ from pytensor.tensor.sort import SortOp
@jax_funcify.register
(
SortOp
)
@jax_funcify.register
(
SortOp
)
def
jax_funcify_Sort
(
op
,
**
kwargs
):
def
jax_funcify_Sort
(
op
,
**
kwargs
):
stable
=
op
.
kind
==
"stable"
def
sort
(
arr
,
axis
):
def
sort
(
arr
,
axis
):
return
jnp
.
sort
(
arr
,
axis
=
axis
)
return
jnp
.
sort
(
arr
,
axis
=
axis
,
stable
=
stable
)
return
sort
return
sort
pytensor/tensor/sort.py
浏览文件 @
3dd1f80f
import
typing
import
numpy
as
np
import
numpy
as
np
from
pytensor.gradient
import
grad_undefined
from
pytensor.gradient
import
grad_undefined
...
@@ -9,20 +11,34 @@ from pytensor.tensor.math import eq, ge
...
@@ -9,20 +11,34 @@ from pytensor.tensor.math import eq, ge
from
pytensor.tensor.type
import
TensorType
from
pytensor.tensor.type
import
TensorType
KIND
=
typing
.
Literal
[
"quicksort"
,
"mergesort"
,
"heapsort"
,
"stable"
]
KIND_VALUES
=
typing
.
get_args
(
KIND
)
def
_parse_sort_args
(
kind
:
KIND
|
None
,
order
,
stable
:
bool
|
None
)
->
KIND
:
if
order
is
not
None
:
raise
ValueError
(
"The order argument is not applicable to PyTensor graphs"
)
if
stable
is
not
None
and
kind
is
not
None
:
raise
ValueError
(
"kind and stable cannot be set at the same time"
)
if
stable
:
kind
=
"stable"
elif
kind
is
None
:
kind
=
"quicksort"
if
kind
not
in
KIND_VALUES
:
raise
ValueError
(
f
"kind must be one of {KIND_VALUES}, got {kind}"
)
return
kind
class
SortOp
(
Op
):
class
SortOp
(
Op
):
"""
"""
This class is a wrapper for numpy sort function.
This class is a wrapper for numpy sort function.
"""
"""
__props__
=
(
"kind"
,
"order"
)
__props__
=
(
"kind"
,)
def
__init__
(
self
,
kind
,
order
=
None
):
def
__init__
(
self
,
kind
:
KIND
):
self
.
kind
=
kind
self
.
kind
=
kind
self
.
order
=
order
def
__str__
(
self
):
return
self
.
__class__
.
__name__
+
f
"{{{self.kind}, {self.order}}}"
def
make_node
(
self
,
input
,
axis
=-
1
):
def
make_node
(
self
,
input
,
axis
=-
1
):
input
=
as_tensor_variable
(
input
)
input
=
as_tensor_variable
(
input
)
...
@@ -33,7 +49,7 @@ class SortOp(Op):
...
@@ -33,7 +49,7 @@ class SortOp(Op):
def
perform
(
self
,
node
,
inputs
,
output_storage
):
def
perform
(
self
,
node
,
inputs
,
output_storage
):
a
,
axis
=
inputs
a
,
axis
=
inputs
z
=
output_storage
[
0
]
z
=
output_storage
[
0
]
z
[
0
]
=
np
.
sort
(
a
,
int
(
axis
),
self
.
kind
,
self
.
order
)
z
[
0
]
=
np
.
sort
(
a
,
int
(
axis
),
self
.
kind
)
def
infer_shape
(
self
,
fgraph
,
node
,
inputs_shapes
):
def
infer_shape
(
self
,
fgraph
,
node
,
inputs_shapes
):
assert
node
.
inputs
[
0
]
.
ndim
==
node
.
outputs
[
0
]
.
ndim
assert
node
.
inputs
[
0
]
.
ndim
==
node
.
outputs
[
0
]
.
ndim
...
@@ -75,9 +91,9 @@ class SortOp(Op):
...
@@ -75,9 +91,9 @@ class SortOp(Op):
# The goal is to get gradient wrt input from gradient
# The goal is to get gradient wrt input from gradient
# wrt sort(input, axis)
# wrt sort(input, axis)
idx
=
argsort
(
a
,
axis
,
kind
=
self
.
kind
,
order
=
self
.
order
)
idx
=
argsort
(
a
,
axis
,
kind
=
self
.
kind
)
# rev_idx is the reverse of previous argsort operation
# rev_idx is the reverse of previous argsort operation
rev_idx
=
argsort
(
idx
,
axis
,
kind
=
self
.
kind
,
order
=
self
.
order
)
rev_idx
=
argsort
(
idx
,
axis
,
kind
=
self
.
kind
)
indices
=
[]
indices
=
[]
axis_data
=
switch
(
ge
(
axis
.
data
,
0
),
axis
.
data
,
a
.
ndim
+
axis
.
data
)
axis_data
=
switch
(
ge
(
axis
.
data
,
0
),
axis
.
data
,
a
.
ndim
+
axis
.
data
)
for
i
in
range
(
a
.
ndim
):
for
i
in
range
(
a
.
ndim
):
...
@@ -101,7 +117,9 @@ class SortOp(Op):
...
@@ -101,7 +117,9 @@ class SortOp(Op):
"""
"""
def
sort
(
a
,
axis
=-
1
,
kind
=
"quicksort"
,
order
=
None
):
def
sort
(
a
,
axis
=-
1
,
kind
:
KIND
|
None
=
None
,
order
=
None
,
*
,
stable
:
bool
|
None
=
None
):
"""
"""
Parameters
Parameters
...
@@ -111,12 +129,12 @@ def sort(a, axis=-1, kind="quicksort", order=None):
...
@@ -111,12 +129,12 @@ def sort(a, axis=-1, kind="quicksort", order=None):
axis: TensorVariable
axis: TensorVariable
Axis along which to sort. If None, the array is flattened before
Axis along which to sort. If None, the array is flattened before
sorting.
sorting.
kind: {'quicksort', 'mergesort', 'heapsort'}, optional
kind: {'quicksort', 'mergesort', 'heapsort'
'stable'
}, optional
Sorting algorithm. Default is 'quicksort'.
Sorting algorithm. Default is 'quicksort'
unless stable is defined
.
order: list, optional
order: list, optional
When `a` is a structured array, this argument specifies which
For compatibility with numpy sort signature. Cannot be specified.
fields to compare first, second, and so on. This list does not
stable: bool, optional
need to include all of the fields.
Same as specifying kind = 'stable'. Cannot be specified at the same time as kind
Returns
Returns
-------
-------
...
@@ -124,10 +142,12 @@ def sort(a, axis=-1, kind="quicksort", order=None):
...
@@ -124,10 +142,12 @@ def sort(a, axis=-1, kind="quicksort", order=None):
A sorted copy of an array.
A sorted copy of an array.
"""
"""
kind
=
_parse_sort_args
(
kind
,
order
,
stable
)
if
axis
is
None
:
if
axis
is
None
:
a
=
a
.
flatten
()
a
=
a
.
flatten
()
axis
=
0
axis
=
0
return
SortOp
(
kind
,
order
)(
a
,
axis
)
return
SortOp
(
kind
)(
a
,
axis
)
class
ArgSortOp
(
Op
):
class
ArgSortOp
(
Op
):
...
@@ -136,14 +156,10 @@ class ArgSortOp(Op):
...
@@ -136,14 +156,10 @@ class ArgSortOp(Op):
"""
"""
__props__
=
(
"kind"
,
"order"
)
__props__
=
(
"kind"
,)
def
__init__
(
self
,
kind
,
order
=
None
):
def
__init__
(
self
,
kind
:
KIND
):
self
.
kind
=
kind
self
.
kind
=
kind
self
.
order
=
order
def
__str__
(
self
):
return
self
.
__class__
.
__name__
+
f
"{{{self.kind}, {self.order}}}"
def
make_node
(
self
,
input
,
axis
=-
1
):
def
make_node
(
self
,
input
,
axis
=-
1
):
input
=
as_tensor_variable
(
input
)
input
=
as_tensor_variable
(
input
)
...
@@ -158,7 +174,7 @@ class ArgSortOp(Op):
...
@@ -158,7 +174,7 @@ class ArgSortOp(Op):
a
,
axis
=
inputs
a
,
axis
=
inputs
z
=
output_storage
[
0
]
z
=
output_storage
[
0
]
z
[
0
]
=
_asarray
(
z
[
0
]
=
_asarray
(
np
.
argsort
(
a
,
int
(
axis
),
self
.
kind
,
self
.
order
),
np
.
argsort
(
a
,
int
(
axis
),
self
.
kind
),
dtype
=
node
.
outputs
[
0
]
.
dtype
,
dtype
=
node
.
outputs
[
0
]
.
dtype
,
)
)
...
@@ -192,7 +208,9 @@ class ArgSortOp(Op):
...
@@ -192,7 +208,9 @@ class ArgSortOp(Op):
"""
"""
def
argsort
(
a
,
axis
=-
1
,
kind
=
"quicksort"
,
order
=
None
):
def
argsort
(
a
,
axis
=-
1
,
kind
:
KIND
|
None
=
None
,
order
=
None
,
stable
:
bool
|
None
=
None
):
"""
"""
Returns the indices that would sort an array.
Returns the indices that would sort an array.
...
@@ -202,7 +220,8 @@ def argsort(a, axis=-1, kind="quicksort", order=None):
...
@@ -202,7 +220,8 @@ def argsort(a, axis=-1, kind="quicksort", order=None):
order.
order.
"""
"""
kind
=
_parse_sort_args
(
kind
,
order
,
stable
)
if
axis
is
None
:
if
axis
is
None
:
a
=
a
.
flatten
()
a
=
a
.
flatten
()
axis
=
0
axis
=
0
return
ArgSortOp
(
kind
,
order
)(
a
,
axis
)
return
ArgSortOp
(
kind
)(
a
,
axis
)
tests/tensor/test_sort.py
浏览文件 @
3dd1f80f
import
numpy
as
np
import
numpy
as
np
import
pytest
import
pytensor
import
pytensor
from
pytensor.tensor.sort
import
ArgSortOp
,
SortOp
,
argsort
,
sort
from
pytensor.tensor.sort
import
ArgSortOp
,
SortOp
,
argsort
,
sort
...
@@ -65,13 +66,12 @@ class TestSort:
...
@@ -65,13 +66,12 @@ class TestSort:
utt
.
assert_allclose
(
gv
,
gt
)
utt
.
assert_allclose
(
gv
,
gt
)
def
test5
(
self
):
def
test5
(
self
):
a1
=
SortOp
(
"mergesort"
,
[]
)
a1
=
SortOp
(
"mergesort"
)
a2
=
SortOp
(
"quicksort"
,
[]
)
a2
=
SortOp
(
"quicksort"
)
# All the below should give true
assert
a1
!=
a2
assert
a1
!=
a2
assert
a1
==
SortOp
(
"mergesort"
,
[]
)
assert
a1
==
SortOp
(
"mergesort"
)
assert
a2
==
SortOp
(
"quicksort"
,
[]
)
assert
a2
==
SortOp
(
"quicksort"
)
def
test_None
(
self
):
def
test_None
(
self
):
a
=
dmatrix
()
a
=
dmatrix
()
...
@@ -208,14 +208,11 @@ def test_argsort():
...
@@ -208,14 +208,11 @@ def test_argsort():
utt
.
assert_allclose
(
gv
,
gt
)
utt
.
assert_allclose
(
gv
,
gt
)
# Example 5
# Example 5
a
=
dmatrix
()
a1
=
ArgSortOp
(
"mergesort"
)
axis
=
lscalar
()
a2
=
ArgSortOp
(
"quicksort"
)
a1
=
ArgSortOp
(
"mergesort"
,
[])
a2
=
ArgSortOp
(
"quicksort"
,
[])
# All the below should give true
assert
a1
!=
a2
assert
a1
!=
a2
assert
a1
==
ArgSortOp
(
"mergesort"
,
[]
)
assert
a1
==
ArgSortOp
(
"mergesort"
)
assert
a2
==
ArgSortOp
(
"quicksort"
,
[]
)
assert
a2
==
ArgSortOp
(
"quicksort"
)
# Example 6: Testing axis=None
# Example 6: Testing axis=None
a
=
dmatrix
()
a
=
dmatrix
()
...
@@ -237,3 +234,22 @@ def test_argsort_grad():
...
@@ -237,3 +234,22 @@ def test_argsort_grad():
data
=
rng
.
random
((
2
,
3
,
3
))
.
astype
(
pytensor
.
config
.
floatX
)
data
=
rng
.
random
((
2
,
3
,
3
))
.
astype
(
pytensor
.
config
.
floatX
)
utt
.
verify_grad
(
lambda
x
:
argsort
(
x
,
axis
=
2
),
[
data
])
utt
.
verify_grad
(
lambda
x
:
argsort
(
x
,
axis
=
2
),
[
data
])
@pytest.mark.parametrize
(
"func"
,
(
sort
,
argsort
))
def
test_parse_sort_args
(
func
):
x
=
matrix
(
"x"
)
assert
func
(
x
)
.
owner
.
op
.
kind
==
"quicksort"
assert
func
(
x
,
stable
=
True
)
.
owner
.
op
.
kind
==
"stable"
with
pytest
.
raises
(
ValueError
,
match
=
"kind must be one of"
):
func
(
x
,
kind
=
"hanoi"
)
with
pytest
.
raises
(
ValueError
,
match
=
"kind and stable cannot be set at the same time"
):
func
(
x
,
kind
=
"quicksort"
,
stable
=
True
)
with
pytest
.
raises
(
ValueError
,
match
=
"order argument is not applicable"
):
func
(
x
,
order
=
[])
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