Fix links in sphinx doc

doc/conf.py

@@ -122,7 +122,7 @@ html_logo = 'images/theano_logo_allblue_200x46.png'
 # Add any paths that contain custom static files (such as style sheets) here,
 # relative to this directory. They are copied after the builtin static files,
 # so a file named "default.css" will overwrite the builtin "default.css".
-html_static_path = ['.static', 'images']
+html_static_path = ['.static', 'images', 'library/d3viz/examples']
 
 # If not '', a 'Last updated on:' timestamp is inserted at every page bottom,
 # using the given strftime format.

doc/library/d3viz/index.txt

-.. _libdoc_printing:
+.. _libdoc_d3viz:
 
 ============================================================================
 :mod:`d3viz` -- d3viz: Interactive visualization of Theano compute graphs
@@ -9,6 +9,7 @@
    :synopsis: Allows to interactively visualize Theano compute graphs
 .. moduleauthor:: Christof Angermueller
 
+
 Guide
 =====
 
@@ -39,17 +40,20 @@ web-browser. ``d3viz`` allows
 -  to visualizing profiling information, and
 -  to explore nested graphs such as OpFromGraph nodes.
 
-.. code:: python
+.. note::
   
-    import theano as th
-    import theano.tensor as T
-    import numpy as np
+    This userguide is also avaible as
+    :download:`IPython notebook <index.ipynb>`.
 
 As an example, consider the following multilayer perceptron with one
 hidden layer and a softmax output layer.
 
 .. code:: python
 
+    import theano as th
+    import theano.tensor as T
+    import numpy as np
+
     ninputs = 1000
     nfeatures = 100
     noutputs = 10
@@ -105,7 +109,7 @@ the the :py:mod:`theano.d3viz.d3viz` module, which can be called as before:
     import theano.d3viz as d3v
     d3v.d3viz(predict, 'examples/mlp.html')
 
-`open <./examples/mlp.html>`__
+`Open visualization! <../../_static/mlp.html>`_
 
 When you open the output file ``mlp.html`` in your web-browser, you will
 see an interactive visualization of the compute graph. You can move the
@@ -146,7 +150,7 @@ random data:
 
     d3v.d3viz(predict_profiled, 'examples/mlp2.html')
 
-`open <./examples/mlp2.html>`__
+`Open visualization! <../../_static/mlp2.html>`_
 
 When you open the HTML file in your browser, you will find an additional
 ``Toggle profile colors`` button in the menu bar. By clicking on it,
@@ -162,7 +166,7 @@ language <http://www.graphviz.org/>`__, using the
 `pydot <https://pypi.python.org/pypi/pydot>`__ package, and defines a
 front-end based on the `d3.js <http://d3js.org/>`__ library to visualize
 it. However, any other Graphviz front-end can be used, which allows to
-export graphs to different formats.
+export graps to different formats.
 
 .. code:: python
 
@@ -170,15 +174,12 @@ export graphs to different formats.
     pydot_graph = formatter(predict_profiled)
     
     pydot_graph.write_png('examples/mlp2.png');
-    pydot_graph.write_png('examples/mlp2.pdf');
 
 .. code:: python
 
     Image('./examples/mlp2.png')
 
 
-
-
 .. image:: index_files/index_24_0.png
 
 
@@ -211,7 +212,7 @@ defines a nested graph, which will be visualized accordingly by
 
     d3v.d3viz(f, 'examples/ofg.html')
 
-`open <./examples/ofg.html>`__
+`Open visualization! <../../_static/ofg.html>`_
 
 In this example, an operation with three inputs is defined, which is
 used to build a function that calls this operations twice, each time
@@ -241,7 +242,7 @@ the following example.
 
     d3v.d3viz(f, 'examples/ofg2.html')
 
-`open <./examples/ofg2.html>`__
+`Open visualization! <../../_static/ofg2.html>`_
 
 Feedback
 --------
@@ -251,7 +252,7 @@ please let me know!
 
 -  Christof Angermueller
 -  cangermueller@gmail.com
--  http://cangermueller.com
+-  https://cangermueller.com
 
 
 References

doc/library/index.txt

@@ -15,6 +15,7 @@ Types and Ops that you can use to build and compile expression graphs.
    gradient
    config
    printing
+   d3viz/index
    compile/index
    sparse/index
    sparse/sandbox