
.. _pipeline:

====================================
Overview of the compilation pipeline
====================================

The purpose of this page is to explain each step of defining and
compiling a Theano function.


Definition of the computation graph
-----------------------------------

By creating Theano :ref:`Variables <variable>` using
``theano.tensor.lscalar`` or ``theano.tensor.dmatrix`` or by using
Theano functions such as ``theano.tensor.sin`` or
``theano.tensor.log``, the user builds a computation graph. The
structure of that graph and details about its components can be found
in the :ref:`graphstructures` article.



Compilation of the computation graph
------------------------------------

Once the user has built a computation graph, she can use
``theano.function`` or a ``theano.Method`` in a ``theano.module`` in
order to make one or more functions that operate on real data. Both
function and Method take a list of input :ref:`Variables <variable>`
as well as a list of output Variables that define a precise subgraph
corresponding to the function(s) we want to define, compile that
subgraph and produce a callable.

Here is an overview of the various steps that are done with the
computation graph in the compilation phase:


Step 1 - Create an Env
^^^^^^^^^^^^^^^^^^^^^^

The subgraph given by the end user is wrapped in a structure called
*Env*. That structure defines several hooks on adding and
removing (pruning) nodes as well as on modifying links between nodes
(for example, modifying an input of an :ref:`apply` node) (see the
article about :ref:`libdoc_gof_env` for more information).

Env provides a method to change the input of an Apply node from one
Variable to another and a more high-level method to replace a Variable
with another. This is the structure that :ref:`Optimizers
<optimization>` work on.

Some relevant :ref:`Features <libdoc_gof_envfeature>` are typically added to the
Env, namely to prevent any optimization from operating inplace on
inputs declared as immutable.


Step 2 - Execute main Optimizer
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

Once the Env is made, an :term:`optimizer` is produced
by the :term:`mode` passed to ``function`` or to the Method/Module's
``make`` (the Mode basically has two important fields, ``linker`` and
``optimizer``). That optimizer is applied on the Env using its
optimize() method.

The optimizer is typically obtained through :attr:`optdb`.


Step 3 - Execute linker to obtain a thunk
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

Once the computation graph is optimized, the :term:`linker` is
extracted from the Mode. It is then called with the Env as argument to
produce a ``thunk``, which is a function with no arguments that
returns nothing. Along with the thunk, one list of input containers (a
theano.gof.Container is a sort of object that wraps another and does
type casting) and one list of output containers are produced,
corresponding to the input and output Variables as well as the updates
defined for the inputs when applicable. To perform the computations,
the inputs must be placed in the input containers, the thunk must be
called, and the outputs must be retrieved from the output containers
where the thunk put them.

Typically, the linker calls the ``toposort`` method in order to obtain
a linear sequence of operations to perform. How they are linked
together depends on the Linker used. The CLinker produces a single
block of C code for the whole computation, whereas the OpWiseCLinker
produces one thunk for each individual operation and calls them in
sequence.

The linker is where some options take effect: the ``strict`` flag of
an input makes the associated input container do type checking. The
``borrow`` flag of an output, if False, adds the output to a
``no_recycling`` list, meaning that when the thunk is called the
output containers will be cleared (if they stay there, as would be the
case if ``borrow`` was True, the thunk would be allowed to reuse (or
"recycle") the storage).

.. note::
    Compiled libraries are stored within a specific compilation directory,
    which by default is set to ``$HOME/.theano/compiledir_xxx``, where
    ``xxx`` identifies the platform. It may be manually set to a different
    location either by setting :attr:`config.compiledir` or
    :attr:`config.base_compiledir`, either within your Python script or by
    using one of the configuration mechanisms described in :mod:`config`.

    The compile cache is based upon the C++ code of the graph to be compiled.
    So, if you change compilation configuration variables, such as
    :attr:`config.blas.ldflags`, you will need to manually remove your compile cache,
    using ``Theano/bin/theano-cache clear``

    Theano also implements a lock mechanism that prevents
    multiple compilations within the same compilation directory (to avoid
    crashes with paralell execution of some scripts). This mechanism is
    currently enabled by default, but if it causes any problem it may be
    disabled using the function
    ``theano.gof.compilelock.set_lock_status(..)``.

Step 4 - Wrap the thunk in a pretty package
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

The thunk returned by the linker along with input and output
containers is unwieldy. ``function`` and ``Method`` hide that
complexity away so that it can be used like a normal function with
arguments and return values.

